Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3668g00003 ATGGGTGAAAATATGTCTTCTTCCACACAAGACGAAATCTCCCTTTTCCTGCGTCAGATTCTCCTTCGTTCATCCTCCTCCTCTCTCACCACCCACGTGCCACCCAACTCCATGAAAAATACACTCCAAGATGGGGTCTCACCCCTTGATTCCACAACCGGAATACGCACTTCGAACCGCGCTTTTTTCTCCGGTTCAGCCTCGCGTGTGTCGGTGGTAGCGAGTGAAAATGAAACTGATGACTACGACTGTGAAAGTGAGGAGGGTGAAGCACTGGCCGAAGAGGTTCAAGTTCCACCAAAGTTGGATCATTCTGGGAGTTCATCAAAAAGGAGCAGAGCTGCGGAAGTTCATAACCTCTCTGAAAAGCGAAGGAGAAGTAGGATCAACGAGAAATTGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTTGATGAAGCTATTGACTACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTTTGTTCTTTCCAGAAGGGTTGCAGCCTTTGCAGTTGTCTCAGATGAGAATGGATTTAGCTGAAGAAAACAGGTCTATCCCTTTAAATGCCACAGCTTCTCTGCCAATGCACCAAGAAAACCCCATACACTACTCATCCAATCTACCTATCAAACACGCTATGGCAGATCAGCCATCAGTGCTCTCCCCATCATATATAATCAACTCAGGAACTTCTTTCGGGCTAGATTCTCGGATTCCGGAAAATATACGACCACTTCAACCCAGAAGATCTTCTGAGCAGATATGTAGAGAAGAAATATTGCAGCTCCAGCAGTTAAATGCAAACCATTCAGATAACCATCTATTAGGTGGTTCTCAAGCATCACTATCCTTTGATATGCAAACATCTGCAGTGAAGGACAACAGCACTTTGGAAACATGCATTACTCGAAGAGATCAGTCAGGAGTGATAATAAGAAATAGGGAGCCATTCTGTCCTCGCAGTTAA 1026 0.4435 MGENMSSSTQDEISLFLRQILLRSSSSSLTTHVPPNSMKNTLQDGVSPLDSTTGIRTSNRAFFSGSASRVSVVASENETDDYDCESEEGEALAEEVQVPPKLDHSGSSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIDYLKQLQLQVQMLSMRNGLSLHPLFFPEGLQPLQLSQMRMDLAEENRSIPLNATASLPMHQENPIHYSSNLPIKHAMADQPSVLSPSYIINSGTSFGLDSRIPENIRPLQPRRSSEQICREEILQLQQLNANHSDNHLLGGSQASLSFDMQTSAVKDNSTLETCITRRDQSGVIIRNREPFCPRS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3668g00003 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 173 IPR036638 GO:0046983
Gabi3668g00003 341 CDD bHLH_AtPIF_like 113 175 IPR047265 -
Gabi3668g00003 341 SMART finulus 119 168 IPR011598 GO:0046983
Gabi3668g00003 341 Gene3D - 108 172 IPR036638 GO:0046983
Gabi3668g00003 341 FunFam Basic helix-loop-helix transcription factor 108 171 - -
Gabi3668g00003 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Gabi3668g00003 341 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 8 292 IPR031066 -
Gabi3668g00003 341 MobiDBLite consensus disorder prediction 74 125 - -
Gabi3668g00003 341 MobiDBLite consensus disorder prediction 78 92 - -
Gabi3668g00003 341 MobiDBLite consensus disorder prediction 106 125 - -
Gabi3668g00003 341 Pfam Helix-loop-helix DNA-binding domain 117 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3668g00003 Gabi-Chr3668 25785 28845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3668g00003 77 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.901 1.01e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3668g00003 HLH 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3668g00003 - - vun:114177198 355.525