Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3668g00002 ATGGGAAGGCCACCTTGTTGTGACAAAAAAGGTGTCAAGAAAGGTCCTTGGACCCCTGAAGAAGATATCATATTGGTCTCTTATATACAGGAACATGGTCCTGGCAATTGGAGGGTTGTTCCCACCAAAACAGGAGGCCAAATCGGACAAGTTACTGGTAATGCAAACATTCGAAACAGGACAAGAAGGTTTCGTTCTTCTTCAAGTTCCTTCACTTATGGAAGGGGTCAATTGCTCCAATCTAGGTTTTATGGACAATACATGAATCTCCCTCAAGAGAGTGCTAATATTGTTCTAAGTAATGGTCGCGGTGCTGCTGTTTCACACCATGATACCGTTGCTACAATGCAGAGATTGACTCCTCCTTCGGGTTCCCTTACTATAAGTCCTCAAAGGTTTTCTGGATCAAATGTGCTTCAATATCAAGGGACTACTCGTACTATCCCTCAGAGTAATGTAGACTCAACTGCTGAACGTGTAGGGAACATTAATCCTTCCATGAATCAAAGGAACAATAATGTTTTACCTATCAAGAGAAGCTCAACTGATGATGTTCCGAGAGAATTTTTAGTAGGTGAAAGTTCCAGCATGGGTGCTGCTGCTGGAACAGCTAAACGAAGGGGTTCTTCTTCTAATGTCAATGTCAATAACAATGTTCCTGTAGCTTCAGTTTCTGAGATGCAACCCTTGAGTCAACCTGCACAGACTGAAAACTTTCAGAGTAATATTAATGTGCATTTCACAGGCCCTACACCTCCAGAGGCATTTGCACCCCCAAACAGTTATGGAAGAAGGTTCATTCATGCACATTACGAAACTTTTTCATTTGGTGCAAGTTCCTCAAATCCACGTCGAATTCGGTTTCCTCCTAGTGTTCGTGAAGTTCATTATGTGAGTTCAGGAAATGCTCCTCCAGCAATGATGCCCTACTATAGCCAGGGAAACATTCAAGGAAATGTCATGCTTGGTCCTCAAGTTCAATTTGGAAGTGGAACTGCAATCTATTTTGGAAATGTTCCCCACCCTTCTGGACAATATGCCTCTTTCAGTGGTGTTAATGCATCGAATGTTCCTGCATTGGTTCCTTTGGAGACACCAATGCAAATTTCGAACTATCCTGGAGGTCGAGCATTTGCTTTCCCTGTGCCAAATTGGACCCTTCTGTCTCCATCGCAGCAAATGCAGTTTTCAAGACCAGTTGGAAATTCTAGACCTGAGAACGAGCACAATTCAGCTGCAACATCTGAGATTCAAGCTGGTGTTAACTCTGTGCCCCTTACTATATCATCGCCTTCTTTTAGGTCTATAATGAGACGCAGGTTGATGGCTCAGGCTCGCACTATCGTGCAACGTTTACGCGCTGGTCAGACTCTACTGTTTCAGGAAATGATGGTCCTCGACTATTCAGTTGTATTACATTTGCTTGAGGTAAGAGACCCGCAACAGGATGAGCTGCAGGATGATGATTTCGAAGAAGAAGAATATGAAGAGGAGAACATGGGACTTACTGAGGAACAGGTCATGAAGCATATTAGGCCTCAAAAATTCGTTTCCGATGAGACTCCAGAAAATAAAGAAGCATGCTGCATTTGCCAGGAGTTCTATGTCAATGGAGAACAAGTTGGGAGGCTGGATTGTGTGCACATATTTCACATTGGCTGCATCATAGGATGGCTCAGGCGGAAGAACCAATGCCCCGTCTGCAAATGCAAGGGATTAATAATTATTGATGAAGATGGTGATGAGTAA 1749 0.434 MGRPPCCDKKGVKKGPWTPEEDIILVSYIQEHGPGNWRVVPTKTGGQIGQVTGNANIRNRTRRFRSSSSSFTYGRGQLLQSRFYGQYMNLPQESANIVLSNGRGAAVSHHDTVATMQRLTPPSGSLTISPQRFSGSNVLQYQGTTRTIPQSNVDSTAERVGNINPSMNQRNNNVLPIKRSSTDDVPREFLVGESSSMGAAAGTAKRRGSSSNVNVNNNVPVASVSEMQPLSQPAQTENFQSNINVHFTGPTPPEAFAPPNSYGRRFIHAHYETFSFGASSSNPRRIRFPPSVREVHYVSSGNAPPAMMPYYSQGNIQGNVMLGPQVQFGSGTAIYFGNVPHPSGQYASFSGVNASNVPALVPLETPMQISNYPGGRAFAFPVPNWTLLSPSQQMQFSRPVGNSRPENEHNSAATSEIQAGVNSVPLTISSPSFRSIMRRRLMAQARTIVQRLRAGQTLLFQEMMVLDYSVVLHLLEVRDPQQDELQDDDFEEEEYEEENMGLTEEQVMKHIRPQKFVSDETPENKEACCICQEFYVNGEQVGRLDCVHIFHIGCIIGWLRRKNQCPVCKCKGLIIIDEDGDE 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3668g00002 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 572 IPR013083 -
Gabi3668g00002 582 MobiDBLite consensus disorder prediction 161 179 - -
Gabi3668g00002 582 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 69 IPR017930 -
Gabi3668g00002 582 MobiDBLite consensus disorder prediction 161 180 - -
Gabi3668g00002 582 Gene3D - 12 66 - -
Gabi3668g00002 582 Pfam Myb-like DNA-binding domain 14 47 IPR001005 -
Gabi3668g00002 582 SUPERFAMILY Homeodomain-like 9 44 IPR009057 -
Gabi3668g00002 582 MobiDBLite consensus disorder prediction 196 215 - -
Gabi3668g00002 582 ProSiteProfiles Myb-like domain profile. 9 47 IPR001005 -
Gabi3668g00002 582 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 184 572 IPR045191 GO:0061630
Gabi3668g00002 582 SUPERFAMILY RING/U-box 527 572 - -
Gabi3668g00002 582 CDD SANT 16 48 IPR001005 -
Gabi3668g00002 582 SMART ring_2 528 568 IPR001841 -
Gabi3668g00002 582 Pfam Ring finger domain 527 569 IPR001841 -
Gabi3668g00002 582 SMART sant 13 67 IPR001005 -
Gabi3668g00002 582 ProSiteProfiles Zinc finger RING-type profile. 528 569 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3668g00002 Gabi-Chr3668 2147 15566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3668g00002 1 45 MYB Transcription Factor Family AT5G62470 91.111 6.89e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi3668g00002 zf-RING_2 4e-10 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3668g00002 - - aprc:113858181 151.369