Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3665g00001 ATGTCACTTAATGAGATCATCACATGGACAGAAGAAAAGAACAACGAAAGCGAACAAGAAGACCTTGAGGTACCTTTGTTTGAATTTGCTTTAATAGCGCATGCCACAGATCACTTCTCAAATCACAAGAAGCTTGGCGAAGGTGGTTTTGGGCCTGTATATAAGGGAACACTACCAGATGGACATGAGATTGCTGTCAAAAGGCTTTCACGAACATCAGGACAAGGATTGAAAGAATTTAAGAATGAAGTTATATTATGCGCCAAGCTTCAACACCGGAATCTTGTTAAAGTTCTTGGATGTTGCATTGAAGAAGATGAGAAATTGCTCATATACGAATTCATGGCCAACAAAAGCCTAGATTTCTTTCTTTTCGATTCTGCTCAAAGTAAACTTCTAGACTGGCCTAAGCGCTTCTACATTATAAATGGAATTGCTCGGGGACTACTTTATCTTCATCAAGACTCAAGATTAAGGATCATACATAGAGATCTTAAGCCAAGTAATATTTTGTTAGACAATGAGATGAACCCAAAAATTTCAGATTTTGGCTTGGCCCGAATGTGTGGAGATGATCAAATTGAAGGGAAATCTAGCAAAGTTGCTGGCACACATGGTTACATGGCACCTGAATATGCTTTTGATGGGATATTTTCCATCAAATCTGATGTTTTTAGCTTCGGCATATTATTGCTAGAGATAGTAAGTGGCAAGAAAAACAATGGGCTCTCTTATCCGAACCACGAGCATAATCTTATTGGACATGCATGGAAAATGTGGAAAGAGGGCAATCCAATGCAATTGATTGATGCTTCTTTGGAGGATTCGTGTATTCTATCTGAAGTATTACGGTGTATTCACATTGGTCTTCTATGCGTGCAGCATCATCCTAATGATAGGCCAAGTATGGCATCTGTGGTTGTGATGTTAAGCAACGAGAATGTTTTGCCTCAACCGAAGGAGCCTCGTTTCTTACTAGAAACGGTGTCAGCTAAAGGAGCGTTTTATTTTGGGAACCAGACACCATCTTCGATTAATGAAGTAACTATCTCCATGTTGAATGCCAGGTAG 1071 0.395 MSLNEIITWTEEKNNESEQEDLEVPLFEFALIAHATDHFSNHKKLGEGGFGPVYKGTLPDGHEIAVKRLSRTSGQGLKEFKNEVILCAKLQHRNLVKVLGCCIEEDEKLLIYEFMANKSLDFFLFDSAQSKLLDWPKRFYIINGIARGLLYLHQDSRLRIIHRDLKPSNILLDNEMNPKISDFGLARMCGDDQIEGKSSKVAGTHGYMAPEYAFDGIFSIKSDVFSFGILLLEIVSGKKNNGLSYPNHEHNLIGHAWKMWKEGNPMQLIDASLEDSCILSEVLRCIHIGLLCVQHHPNDRPSMASVVVMLSNENVLPQPKEPRFLLETVSAKGAFYFGNQTPSSINEVTISMLNAR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3665g00001 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Gabi3665g00001 356 SMART serkin_6 39 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3665g00001 356 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 354 - -
Gabi3665g00001 356 CDD STKc_IRAK 45 310 - -
Gabi3665g00001 356 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 115 318 - -
Gabi3665g00001 356 Gene3D Phosphorylase Kinase; domain 1 12 114 - -
Gabi3665g00001 356 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Gabi3665g00001 356 Pfam Domain of unknown function (DUF3403) 311 356 IPR021820 GO:0004674
Gabi3665g00001 356 Pfam Protein tyrosine and serine/threonine kinase 41 309 IPR001245 GO:0004672|GO:0006468
Gabi3665g00001 356 ProSiteProfiles Protein kinase domain profile. 39 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3665g00001 356 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 4 114 - -
Gabi3665g00001 356 Gene3D Transferase(Phosphotransferase) domain 1 115 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3665g00001 Gabi-Chr3665 19572 22520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3665g00001 27 328 Receptor kinase-like Gene Family AT4G23230 57.096 5.93e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3665g00001 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3665g00001 - - gmx:100786696 574.318