Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3660g00043 ATGGAGGAGGAAGAGCATGAGGTGTACGGTGGTGAGATCCCCGACGTTGGAGAGATGGAAGGTGATATCGACTCTCACCATGACCACCCCGACGTTGACATGTCCGCTGCCGACGACGACGACGCCGTCAAGGAGCTCGACGAGATGAAGAAGCGCTTGAAGGAAATGGAAGAGGAAGCCGCTGCTCTTCGTGAAATGCAAGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTAGTGCAGCTGCTTCGCAGGACAACAAGGAGGAGACAGACGCTCGATCTGTTTTTGTTGGCAATGTTGACTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCGTGTGGTACAGTGAACAGGGTAACTATCCTGACAGACAAGTTTGGGCAGCCTAAAGGTTTTGCTTATGTGGAATTCCTTGAAACTGAAGCTGTTCAAGAGGGTCTCCTACTGAACGAATCTGAATTACATGGGCGTCAATTGAAGGTTATGCCAAAGAGGACCAACGTTCCTGGAATGAAACAATTTCGTCCTAGGCGTTTTAATCCTTACATGGGGTATCACATCAGGAGACCATATCCTCCTCCTTACTTCTACTCCCCTTATGGATATGGAAAGGCTCCCAGGTTTAGAAGGCCAGGTCGGTACATGCCATACTATTAG 675 0.4933 MEEEEHEVYGGEIPDVGEMEGDIDSHHDHPDVDMSAADDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAASQDNKEETDARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETEAVQEGLLLNESELHGRQLKVMPKRTNVPGMKQFRPRRFNPYMGYHIRRPYPPPYFYSPYGYGKAPRFRRPGRYMPYY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3660g00043 224 MobiDBLite consensus disorder prediction 19 39 - -
Gabi3660g00043 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Gabi3660g00043 224 CDD RRM_II_PABPs 97 167 - -
Gabi3660g00043 224 MobiDBLite consensus disorder prediction 72 94 - -
Gabi3660g00043 224 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 33 178 - -
Gabi3660g00043 224 FunFam Polyadenylate-binding protein 1 34 168 - -
Gabi3660g00043 224 MobiDBLite consensus disorder prediction 1 39 - -
Gabi3660g00043 224 Gene3D - 23 179 IPR012677 -
Gabi3660g00043 224 Coils Coil 39 73 - -
Gabi3660g00043 224 SUPERFAMILY RNA-binding domain, RBD 86 191 IPR035979 GO:0003676
Gabi3660g00043 224 SMART rrm1_1 97 168 IPR000504 GO:0003723
Gabi3660g00043 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 172 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3660g00043 Gabi-Chr3660 446768 453021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3660g00043 97 167 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 1.73e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3660g00043 K14396 - cave:132165565 354.755