Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3660g00042 ATGGAGGAGGAAGAGCATGAGGTGTACGGTGGTGAGATCCCCGACGTTGGAGAGATGGAAGGTGATATCGACTCTCACCATGACCACCCCGACGTTGACATGTCCGCTGCCGACGACGACGACGCCGAGCTCGACGAGATGAAGAAGCGCTTGAAGGAAATGGAAGAGGAAGCCGCTGCTCTTCGTGAAATGCAAGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTAGTGCAGCTGCTTCGCAGGACAACAAGGAGGAGACAGACGCTCGATCTGTTTTTGTTGGCAATGTTGACTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCGTGTGGTACAGTGAACAGGGTAACTATCCTGACAGACAAGTTTGGGCAGCCTAAAGGTTTTGCTTATGTGGAATTCCTTGAAACTGAAGCTGTTCAAGAGGGTCTCCTACTGAACGAATCTGAATTACATGGGCGTCAATTGAAGGTTATGCCAAAGAGGACCAACGTTCCTGGAATGAAACAATTTCGTCCTAGGCGTTTTAATCCTTACATGGGGTATCACATCAGGAGACCATATCCTCCTCCTTACTTCTACTCCCCTTATGGATATGGAAAGGCTCCCAGGTTTAGAAGGCCAGGTCGGTACATGCCATACTATTAG 669 0.4933 MEEEEHEVYGGEIPDVGEMEGDIDSHHDHPDVDMSAADDDDAELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAASQDNKEETDARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETEAVQEGLLLNESELHGRQLKVMPKRTNVPGMKQFRPRRFNPYMGYHIRRPYPPPYFYSPYGYGKAPRFRRPGRYMPYY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3660g00042 222 SMART rrm1_1 95 166 IPR000504 GO:0003723
Gabi3660g00042 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Gabi3660g00042 222 SUPERFAMILY RNA-binding domain, RBD 84 189 IPR035979 GO:0003676
Gabi3660g00042 222 Gene3D - 23 177 IPR012677 -
Gabi3660g00042 222 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 33 176 - -
Gabi3660g00042 222 CDD RRM_II_PABPs 95 165 - -
Gabi3660g00042 222 MobiDBLite consensus disorder prediction 19 34 - -
Gabi3660g00042 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 170 IPR000504 GO:0003723
Gabi3660g00042 222 MobiDBLite consensus disorder prediction 69 92 - -
Gabi3660g00042 222 MobiDBLite consensus disorder prediction 1 44 - -
Gabi3660g00042 222 Coils Coil 37 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3660g00042 Gabi-Chr3660 446768 453021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3660g00042 95 165 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 1.58e-08 52.4