Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3660g00041 ATGGAGGAGGAAGAGCATGAGGTGTACGGTGGTGAGATCCCCGACGTTGGAGAGATGGAAGGTGATATCGACTCTCACCATGACCACCCCGACGTTGACATGTCCGCTGCCGACGACGACGACATGAAGAAGCGCTTGAAGGAAATGGAAGAGGAAGCCGCTGCTCTTCGTGAAATGCAAGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTAGTGCAGCTGCTTCGCAGGACAACAAGGAGGAGACAGACGCTCGATCTGTTTTTGTTGGCAATGTTGACTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCGTGTGGTACAGTGAACAGGGTAACTATCCTGACAGACAAGTTTGGGCAGCCTAAAGGTTTTGCTTATGTGGAATTCCTTGAAACTGAAGCTGTTCAAGAGGGTCTCCTACTGAACGAATCTGAATTACATGGGCGTCAATTGAAGGTTATGCCAAAGAGGACCAACGTTCCTGGAATGAAACAATTTCGTCCTAGGCGTTTTAATCCTTACATGGGGTATCACATCAGGAGACCATATCCTCCTCCTTACTTCTACTCCCCTTATGGATATGGAAAGGCTCCCAGGTTTAGAAGGCCAGGTCGGTACATGCCATACTATTAG 654 0.4878 MEEEEHEVYGGEIPDVGEMEGDIDSHHDHPDVDMSAADDDDMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAASQDNKEETDARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETEAVQEGLLLNESELHGRQLKVMPKRTNVPGMKQFRPRRFNPYMGYHIRRPYPPPYFYSPYGYGKAPRFRRPGRYMPYY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3660g00041 217 MobiDBLite consensus disorder prediction 64 87 - -
Gabi3660g00041 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 14 171 - -
Gabi3660g00041 217 MobiDBLite consensus disorder prediction 19 40 - -
Gabi3660g00041 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 165 IPR000504 GO:0003723
Gabi3660g00041 217 Coils Coil 39 66 - -
Gabi3660g00041 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Gabi3660g00041 217 SUPERFAMILY RNA-binding domain, RBD 79 184 IPR035979 GO:0003676
Gabi3660g00041 217 Gene3D - 27 161 IPR012677 -
Gabi3660g00041 217 CDD RRM_II_PABPs 90 160 - -
Gabi3660g00041 217 SMART rrm1_1 90 161 IPR000504 GO:0003723
Gabi3660g00041 217 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3660g00041 Gabi-Chr3660 446768 453021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3660g00041 90 160 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 1.69e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3660g00041 K14396 - jre:109014561 344.739