Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3660g00030 ATGACCATGACCATGTCTAACTCTAACACTAATCCAAACGGAGATTACCGAGTCACAACCCGAATGCTTCACCCGCAGGATCCGAATAGCTCCGCGGACCCTCAGGTTCCGCTTCGGAACCTCTCCTTGGTTCGGACGAGAATGGATTCTCTACAACGCTTCCTATCGCAATCTATTAACTCCAACGCTCCCGTCACCAATGATCAGATCACCACCGTCTCCAACCAGATCGTCGCCGCCATCCACCAGATCATCGTCAACGGCGCCGCCTTAGTCTCTTACTCCCAAAACATCACAGCCGCCGGAGCCTCCGTGTTCTCGCAGGATCCGCCGGATCCGCCGCCGCATCCGAAGAAGCCGAGGCTTGAATTCTCCGCCGCCGACAAGGCCAAACAGGTGCTCGATTTGAAAGTCGAGGCTGCAGAAGACGACGACGCAGCAGCAGAAGACTGCGACGACGATTGCGAAATCGTGGAGCTCGACGCCATGGAATTGCTCGCGGAGCACATTCATTTCTGCGAGATATGCGGGAAAGGGTTCAGGCGCGATGCGAATCTTCGTATGCACATGCGCGCGCACGGGAACCAGTTCAAGACGCCGGAAGCGTTGGCGAAGCCGTCGGAGGAGGTAGCCGGAGCCACGCGCCGGCGAGCGACGCGATTCTCTTGTCCGTTCGAAGGCTGCAACAGGAACAAGCTGCACCGGAAGTTCAGGCCGTTGAAGTCGATCGTTTGCGTGAAGAATCATTTCAAGAGGAGTCACTGTCCGAAGATGTACTCGTGTAACCGTTGCCACAAGAAGAATTTCTCGGTGCTCTCGGATTTGAAGAGCCACATGAAGCACTGTGGAGAGTCGAGGTGGAAGTGCTCGTGTGGGACCACGTTTTCAAGGAAGGACAAGTTGTTCGGTCACATAGCTTTGTTTGAAGGTCACATGCCTGCTCTTGCTTTGGATGAAGAGGATAAAGAGAAAGCGAAGCGAGTGGTGGAGGAAGATCAAGATCAAGATCAAGATCCAGTGGTGATGACTGAAAGTGAATTGGGTAATTGTTTTCTTGATGATGGGTTCTTTGATGATTTTGGGTCCATTGATAACTACTCTTTAGGGGAAGTTTTGGGGTTTCCTAGTAATTTGACATGA 1140 0.5272 MTMTMSNSNTNPNGDYRVTTRMLHPQDPNSSADPQVPLRNLSLVRTRMDSLQRFLSQSINSNAPVTNDQITTVSNQIVAAIHQIIVNGAALVSYSQNITAAGASVFSQDPPDPPPHPKKPRLEFSAADKAKQVLDLKVEAAEDDDAAAEDCDDDCEIVELDAMELLAEHIHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPSEEVAGATRRRATRFSCPFEGCNRNKLHRKFRPLKSIVCVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHMKHCGESRWKCSCGTTFSRKDKLFGHIALFEGHMPALALDEEDKEKAKRVVEEDQDQDQDPVVMTESELGNCFLDDGFFDDFGSIDNYSLGEVLGFPSNLT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3660g00030 379 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 337 IPR044300 GO:0010044|GO:0010447
Gabi3660g00030 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Gabi3660g00030 379 Gene3D Classic Zinc Finger 246 314 - -
Gabi3660g00030 379 SUPERFAMILY beta-beta-alpha zinc fingers 167 194 IPR036236 -
Gabi3660g00030 379 Coils Coil 315 335 - -
Gabi3660g00030 379 SMART c2h2final6 221 254 IPR013087 -
Gabi3660g00030 379 SMART c2h2final6 171 193 IPR013087 -
Gabi3660g00030 379 SMART c2h2final6 259 281 IPR013087 -
Gabi3660g00030 379 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Gabi3660g00030 379 Pfam Zinc finger, C2H2 type 172 193 IPR013087 -
Gabi3660g00030 379 Gene3D Classic Zinc Finger 171 194 - -
Gabi3660g00030 379 FunFam Zinc finger 45-like 168 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3660g00030 Gabi-Chr3660 323976 325383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3660g00030 156 319 C2H2 Transcription Factor Family AT1G34370 65.455 1.22e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3660g00030 zf-C2H2 0.00026 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3660g00030 - - gmx:100796506 477.633