Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3660g00006 ATGACGCAGCAGAATGTGGTAGTGTCTGACACCAAATCTGGGGTTGCCGTGTCTGTTTTCCCACCAACAGCACAAAAGCCACCAGCAGCACAAGGTGGGTACATTTCCATTTCAAGGAGGAGGATTTTCAAGAACCTTGAAATCAATGGAGGACAAAGAATTAACGCATGGGTTGAGTCCATGAGAGCCTCTTCTCCAACCCATCTTAAATCAACACCTTCTTTAGCTGAAGAGCAAAGCTCTTGGATTCTTCACCACCCGTCAGCATTAGACATGTTTGACCAAATTGTGGATGCATCAAAGGGAAAGCAAATTGTCATGTTTCTGGACTATGATGGAACGCTGTCCCCTATAGTTGAAGACCCTGACCGTGCTTTCATGTCTGATTCGATGAGAAAAACAGTGAGGAAACTTGCAAGGTGTTTTCCTACTGCTATTGTGACTGGCAGATGCAAAGACAAGGTATACAATTTTGTTCGGTTGGCAGAGCTATATTATGCTGGAAGCCATGGCATGGATATTAAAGGGCCAACAAGAAGCTCCAAAAACAAATATAGTAAAGCTGAGGCAGTTCTTTTTCAACCAGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTACCAACAATTGGTTGATAAGACAAAATCAACCCCTGGAGCCAAGGTTGAGAACAACAAGTTCTGTGTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACGCCAAGTGAAATCAGTGTTAAAAGACTACCCAAAGCTTCGTCTTACCCAAGGAAGAAAGGTGTTAGAGATCCGTCCTACAATTAAATGGGACAAAGGGAAAGCCCTCGAATTTTTATTAGAGTCACTCGGATTTGCCAACTGTAGTGATGTCTTTCCTGTTTATATTGGTGATGATCGATCCGATGAAGATGCGTTCAAGAAATTAAGAGACAGGGGACAAGGTTTTGGCATTCTTGTGTCGAAATTTCCAAAAGACACAAGTGCATCTTACTCTTTACAAGAACCCAATGAGGTTATGGACTTTCTTCAACGCTTGGTGGAGTGGAAACGTGTATCCCTGCGAGCACGTTCCAGGGTGTAA 1098 0.4308 MTQQNVVVSDTKSGVAVSVFPPTAQKPPAAQGGYISISRRRIFKNLEINGGQRINAWVESMRASSPTHLKSTPSLAEEQSSWILHHPSALDMFDQIVDASKGKQIVMFLDYDGTLSPIVEDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRSSKNKYSKAEAVLFQPASEFLPMIDEVYQQLVDKTKSTPGAKVENNKFCVSVHFRCVDEKKWSELARQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGFANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMDFLQRLVEWKRVSLRARSRV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3660g00006 365 SUPERFAMILY HAD-like 106 355 IPR036412 -
Gabi3660g00006 365 NCBIfam HAD-IIB family hydrolase 107 317 IPR006379 -
Gabi3660g00006 365 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 9 359 IPR044651 GO:0004805|GO:0005992
Gabi3660g00006 365 FunFam Trehalose 6-phosphate phosphatase 202 361 - -
Gabi3660g00006 365 NCBIfam trehalose-phosphatase 103 352 IPR003337 GO:0003824|GO:0005992
Gabi3660g00006 365 CDD HAD_TPP 106 345 - -
Gabi3660g00006 365 FunFam Trehalose 6-phosphate phosphatase 105 191 - -
Gabi3660g00006 365 Pfam Trehalose-phosphatase 108 341 IPR003337 GO:0003824|GO:0005992
Gabi3660g00006 365 Gene3D - 204 363 IPR023214 -
Gabi3660g00006 365 Gene3D - 105 194 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3660g00006 Gabi-Chr3660 105038 107993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3660g00006 93 314 Trehalose Biosynthesis Gene Families AT1G23870 27.155 2.38e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3660g00006 K01087 - gmx:100815357 669.848