Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3660g00005 ATGGCAGCAGCTATAGATATCTATAATAATAATAATAATAATAGTAGTAGTTTCCTAGACCCGTGTAGTGAAGAGCTGATGAAAGCACTTGAGCCTTTTATGAAAAGTGATTCATCTAGCACTTCCTTAACCTCCTTTTCTCTAATTTCTTCATCATCTACTCCTTCCACTTGTTCCTCTTACCCTTCACTTTCTTCTTCTTTCCCCAATTTATATCCTAACTTTCCCTTAACACCATCAAGCACCCAAATGTTTTCCCACGAGTTCTCAAATCAAGCCAGTTCAATCAAACTGAACCATCTCACCCCATCTCAAATTCTTCAGATTCAAGCTCAAATCCATACTCAACAACAACAACAACAACACCATATATCTAACATGGCTGTAGCTTCCCTCCAAAAACAACACGCCCTCAACTTTCTTAGCCCAAAACCTGTCCCTATGAAGCACGTAGGTGTTCCTACAAAACCAACAAAGCTTTACCGTGGGGTGAGACAGAGGCATTGGGGAAAGTGGGTCGCTGAGATAAGACTCCCAAAGAACCGTACCCGTCTCTGGCTTGGCACATTTGAAACCGCTGAAGAAGCAGCTTTGGCATATGATAACGCAGCTTTTAAACTAAGGGGTGAGCATGCTAGGCTTAATTTTCCTCATCTACGCCACCATGGAGCTCATGTCTATGGTGATTTTGGGGACTACAAGCCTCTCCCTTCTTCAGTGGATGCGAAGCTCCAAGCTATTTGTCAAAGCTTGGTCATCAATTCGCAGGGGAAAACAGAAAAAAATCCCTGTTCTGTTGTGGATACAAAGCCTAAGGTGGAGTTTGATATGGCACAGTCCAACACCGAATATGGTTGTCCAGAGTTCGAGGATTTTAAGGTCGAGAACCCAACATCTTCGATTTTGTCCGATGAATCATCTGCTGGTTCGTCTTCCCCTGAATCCGATATTACTTTCTTGGATTTCTCGGGTTTTAATGAAGAGGAAAATCTTGGATTGGACTTGAAGAAGTATCCTTCGGTGGAGATTGATTGGGAAGCTATCTGA 1047 0.426 MAAAIDIYNNNNNNSSSFLDPCSEELMKALEPFMKSDSSSTSLTSFSLISSSSTPSTCSSYPSLSSSFPNLYPNFPLTPSSTQMFSHEFSNQASSIKLNHLTPSQILQIQAQIHTQQQQQQHHISNMAVASLQKQHALNFLSPKPVPMKHVGVPTKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGEHARLNFPHLRHHGAHVYGDFGDYKPLPSSVDAKLQAICQSLVINSQGKTEKNPCSVVDTKPKVEFDMAQSNTEYGCPEFEDFKVENPTSSILSDESSAGSSSPESDITFLDFSGFNEEENLGLDLKKYPSVEIDWEAI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3660g00005 348 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Gabi3660g00005 348 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Gabi3660g00005 348 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Gabi3660g00005 348 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Gabi3660g00005 348 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Gabi3660g00005 348 Pfam AP2 domain 161 210 IPR001471 GO:0003700|GO:0006355
Gabi3660g00005 348 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Gabi3660g00005 348 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Gabi3660g00005 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 348 - -
Gabi3660g00005 348 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3660g00005 Gabi-Chr3660 78627 80299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3660g00005 1 348 AP2-EREBP Transcription Factor Family AT1G78080 47.453 3.72e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3660g00005 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3660g00005 K09286 - tcc:18611594 347.051