Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3659g00050 ATGGAGAGGGTTGTCGGAAGAAAGTATAAGATTGGTCGGAAAATTGGGAGTGGATCATTTGGTGAAATTCATATTGGGTCGCATATGGAGACCTCTGAGATTGTGGCCGTCAAGATGGAGAACAGGACAACCAAACATCCGCAACTACTGTTTGAGGCCAAGTTATATAATATTCTTCGAGGAGGAAGTGGTATTCCAAGTATGAAATGGTTTGGTACTGAGGGAGACAATAATGTTCTAGTTCTTGAACTTCTGGGACCGAGTCTTGAAGACCTTTTCTTCTTCTGTGGGAAGAAATTTTCACTAAAAGCAGTTTTGATGTTGGCTGATCAGATGCTTACGAGGATAGAGCTTTTGCATTCCAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAAGCAAACCAGGTTTATATGATTGATTTTGGACTTGCCAAAGAATATATGGACCCTAACACAAACAAGCATATCCCTTACAGGTATAAAAATGTTAATGTAACATCCCCGTCTCGAGCCGGTTCAATTAACATA 555 0.4054 MERVVGRKYKIGRKIGSGSFGEIHIGSHMETSEIVAVKMENRTTKHPQLLFEAKLYNILRGGSGIPSMKWFGTEGDNNVLVLELLGPSLEDLFFFCGKKFSLKAVLMLADQMLTRIELLHSKGFLHRDIKPDNFLMGLGRKANQVYMIDFGLAKEYMDPNTNKHIPYRYKNVNVTSPSRAGSINI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3659g00050 185 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Gabi3659g00050 185 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi3659g00050 185 Gene3D Transferase(Phosphotransferase) domain 1 86 180 - -
Gabi3659g00050 185 PANTHER CASEIN KINASE-RELATED 7 181 - -
Gabi3659g00050 185 SUPERFAMILY Protein kinase-like (PK-like) 5 174 IPR011009 -
Gabi3659g00050 185 SMART serkin_6 9 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3659g00050 185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi3659g00050 185 ProSiteProfiles Protein kinase domain profile. 9 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3659g00050 185 Pfam Protein kinase domain 9 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3659g00050 Gabi-Chr3659 581132 582847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3659g00050 5 153 EF-hand Containing Proteins AT4G23650 31.613 1.25e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi3659g00050 Pkinase 5.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3659g00050 K08960 - gmx:100782913 299.671