Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3659g00041 ATGGACAGTGACCGGAAAATCCCTGCTCCATCAGATGGGCTCATTGATGGTGTTCAGAAAATTAGAGCATTGCATGGGAGGACAACGGGCCCTACAAGGCGCTCTACAAAAGGGCAATGGACACCTGAGGAGGATGAGATCTTACGGAAGGCTGTTCAGCATTTCAATGGAAAAAATTGGAAAAAAATAGCGGAATGTTTCAAGGATAGAACTGATGTTCAATGCCTACATAGGTGGCAGAAAGTCTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAAGTAATTATTGAATTGGTGAACAAATATGGGCCTAAAAAGTGGTCAACTATTGCGCAACATTTACCGGGACGTATTGGTAAGCAGTGTCGAGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAGGAAGCATGGACACAGGAAGAAGAGTTGGCTCTCATACACGCTCATCAGATTTATGGGAACAGATGGGCAGAATTAACGAAGTTCTTACCTGGAAGGACTGACAATGCTATTAAAAACCACTGGCACAGTTCTGTCAAAAAAAAGTTGGATTCTTACTTGGCATCAGGCTTGCTTACTCAGTTCCAATCTATACCTCATGTTGGAAATCCGAATCAACTGGTAACTTCGAGGTTGCAGTGCAGTGGAGATGATAGTGGTCCTAAAGGGGGAACTGAAGGAGAGGAAGTTTCAGAGTGTAGCCAAGTTTCAGAGTCAGCAAATGCTATTTGCTATCCATCTGCTAGAGAGAAGAGCAATGTTGACTTACAAACTGCAGAGGAATATAGGTCAAATGAAGAATGTAGTCTTGGAAAGGATCATAGTCATAGTCATAGTCAATCATCCTGTTCAGAGCCATATTACGCATCGCTTGATGATGTTTCTTTATGCATCCCAGAAATTGCTTGCCAAGAGGGTTGCTCTTCTCAATTTATTGAGCGACAATACTCACATGAACCTGGAAATTCCACAAGTGAGGATTGCCAGTTTAATTTACATTCCTTACCCAATATTTCATCAATGGACTTGGGGCAGGAATCCTTGCAGTTGCAAAGAGATTGTATATCTCCTAATGAAATCCATGACATGGTGAATGTTCCTTTTCAGACTTCAGCAGGGTTAAGTGTTTCAACATCCATGAGACCTACATCTATGAATTCTGTTAAACCAGAGCACATGTTGATATCTGATGATGAATGTTACAGAGTCATGTTTTCAGAGGCAATGAATGACGGATGTTTTTCCCCTGGAGTTTATAATAAATGTGCAGATATGGTTGAATTTTCTGGATGTGCTTCATTTCTTTGTCAATCATGTGATATCCAGATATCTGAAACTGGTGGAACCTCAACTTTACAGCTAACTTGTCCTCGGTGTTCTAATAATTTCAAAGGAACTTCATCCTCCCAATCTGTCCCTCCAGTACTTTCTTCCAGCAGGCTGGTGTATACTGCCAAAGGCAATCAGTTACCTGGGCCTGAGGATCAGCAGTTTGTCTCTGAAGCACCAGATAATTTCACTTATGCCAATGTCATATCCAGTTCTCATTGTATTGATGATATAGACAGTTCAGTTATGCAAAAGCCACCTGATAATCTGAAGGATACTTCAGATTTGGTCCCTGTAAATGGGCTTGGCTGTGGATCAGATGCTAAGCAAACTTGTTATCCAACAGATGAAAAGCCAAACGTGCATACAGAAAAGGACATAGGAGCTCTATGTTATGAACCTCCCCGTTTTCCAAGCTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGGGTGATATTATGCAACAAGAATTTAGTCCCCTGGGTATCCGCCAGTTTACGATGTCTTCTTCTATGAACTGTCTAACTCCTTTCAAGTTGTGGGATTCACCTTCTTGTGATGATAGCCCAGATGCATTGTTGAAAAATGCAGCTAAATCTTTTATGGGTACACCATCAATATTAAAGAAACGACACCGAGATTTGTTATCGCCACTCTCAGATAAAAGAATAGACAAGAAACTTGAGATTGACATGACATCCACCTTGACCAAAAGTTTTTCCAGTTTGGCTGTCATGTTTGAGGACAATGAGACTCAGGAAGTAGACATGCTTTGTCCATCTTCATCACAAAAATGGAACTCTGGTGCGTCTGTTGATGATGATGATAAAGAAAATAGGGTACAAGTTTTTAAAGAGGATAAGGTTAAGCAGGAACCTCTTGATGTTGATTCTAAGATGAAGATTGATGCTGCTGCTGAGATTGTGCAACAACCTTCTGGAGTTTTGTTTGAACATGATATAAATGATCTGTCTCTGCTTTCTCCTGATCATGTTGGTTTTAAATCAGACAGAGTTCTGGGTTCAAGTGCTAGAACTCCCAAAAACTTGAACTATAGGAGCTTGGAAGCAGCCCCAAACCAGAACATCCCTCTGAAATTATCTTCTGAAAATACATGCCCAAGGGTTAAATCTCATTGTGTTCGTGGGAAGGAGCATGAAAAACTTTCAGTTGCTGTTGCTTGTGTACAAGCTCCAGGGGAGAATTCGGGGGATCAAACTAGAAAGGATGGTGATTTTGAAAACATATTTGGTGGAACACCTTTTAGGAAAGGCTTTGAATCACCTTCCGCATGGAAATCGCCGATATGGAAGTCTCCTTGGTTTATCAATACTTTTCTGTCTAGCCCCAGACTTGATACTGAAATTAGAATTGAGGATTTTGGAAATTTAATGAGCCCAGGTGATATAAGTTTTGAAGCGCTTGGGTTGTTGAAAGAGATCAATGAACAAACTGCTGCCTTATATGCCAATGTTCAGGAGATTTTGGAAAATGAAACTCCTAAGGCGTTACCAAAAGATGCATCCGGAAATGACAAGGATAGGGACAGGGAAAATAATGATCCTCCCATTCACCTGGGAAATGAAACTCCTAAGGTGTTACCTAAAGATGCATCTGGAAATGTGGACCAGGAAAATAATGATCCTGCGAATCAGCCTGGGAACCATTCTCTGTTTTCTTCAAATGCTTTGATGGAGCGACGCATACTTGACTTTAGTGAATGTGAAACACCAAGCTAA 3099 0.4082 MDSDRKIPAPSDGLIDGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRKAVQHFNGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVIIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIHAHQIYGNRWAELTKFLPGRTDNAIKNHWHSSVKKKLDSYLASGLLTQFQSIPHVGNPNQLVTSRLQCSGDDSGPKGGTEGEEVSECSQVSESANAICYPSAREKSNVDLQTAEEYRSNEECSLGKDHSHSHSQSSCSEPYYASLDDVSLCIPEIACQEGCSSQFIERQYSHEPGNSTSEDCQFNLHSLPNISSMDLGQESLQLQRDCISPNEIHDMVNVPFQTSAGLSVSTSMRPTSMNSVKPEHMLISDDECYRVMFSEAMNDGCFSPGVYNKCADMVEFSGCASFLCQSCDIQISETGGTSTLQLTCPRCSNNFKGTSSSQSVPPVLSSSRLVYTAKGNQLPGPEDQQFVSEAPDNFTYANVISSSHCIDDIDSSVMQKPPDNLKDTSDLVPVNGLGCGSDAKQTCYPTDEKPNVHTEKDIGALCYEPPRFPSLDIPFFSCDLVQSGGDIMQQEFSPLGIRQFTMSSSMNCLTPFKLWDSPSCDDSPDALLKNAAKSFMGTPSILKKRHRDLLSPLSDKRIDKKLEIDMTSTLTKSFSSLAVMFEDNETQEVDMLCPSSSQKWNSGASVDDDDKENRVQVFKEDKVKQEPLDVDSKMKIDAAAEIVQQPSGVLFEHDINDLSLLSPDHVGFKSDRVLGSSARTPKNLNYRSLEAAPNQNIPLKLSSENTCPRVKSHCVRGKEHEKLSVAVACVQAPGENSGDQTRKDGDFENIFGGTPFRKGFESPSAWKSPIWKSPWFINTFLSSPRLDTEIRIEDFGNLMSPGDISFEALGLLKEINEQTAALYANVQEILENETPKALPKDASGNDKDRDRENNDPPIHLGNETPKVLPKDASGNVDQENNDPANQPGNHSLFSSNALMERRILDFSECETPS 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3659g00041 1032 CDD SANT 91 135 IPR001005 -
Gabi3659g00041 1032 FunFam Transcription factor MYB3R-2 142 204 - -
Gabi3659g00041 1032 ProSitePatterns Aminotransferases class-II pyridoxal-phosphate attachment site. 688 697 IPR001917 GO:0016740
Gabi3659g00041 1032 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Gabi3659g00041 1032 SUPERFAMILY Homeodomain-like 35 97 IPR009057 -
Gabi3659g00041 1032 Coils Coil 931 951 - -
Gabi3659g00041 1032 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Gabi3659g00041 1032 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Gabi3659g00041 1032 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Gabi3659g00041 1032 Gene3D - 89 140 - -
Gabi3659g00041 1032 FunFam Transcriptional activator Myb isoform A 89 141 - -
Gabi3659g00041 1032 Gene3D - 142 201 - -
Gabi3659g00041 1032 PANTHER MYB PROTEIN-RELATED 37 110 - -
Gabi3659g00041 1032 MobiDBLite consensus disorder prediction 959 976 - -
Gabi3659g00041 1032 MobiDBLite consensus disorder prediction 216 239 - -
Gabi3659g00041 1032 CDD SANT 40 83 IPR001005 -
Gabi3659g00041 1032 Gene3D - 36 88 - -
Gabi3659g00041 1032 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Gabi3659g00041 1032 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Gabi3659g00041 1032 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Gabi3659g00041 1032 FunFam Transcriptional activator Myb isoform A 36 88 - -
Gabi3659g00041 1032 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Gabi3659g00041 1032 SMART sant 140 188 IPR001005 -
Gabi3659g00041 1032 SMART sant 88 137 IPR001005 -
Gabi3659g00041 1032 SMART sant 36 85 IPR001005 -
Gabi3659g00041 1032 CDD SANT 143 183 IPR001005 -
Gabi3659g00041 1032 MobiDBLite consensus disorder prediction 993 1015 - -
Gabi3659g00041 1032 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Gabi3659g00041 1032 MobiDBLite consensus disorder prediction 953 1015 - -
Gabi3659g00041 1032 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3659g00041 Gabi-Chr3659 444745 457155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3659g00041 5 1031 MYB Transcription Factor Family AT4G32730 42.965 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3659g00041 Myb_DNA-binding 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3659g00041 - K09420 aprc:113848458 1466.06