Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3653g00002 ATGGAGTTGTATGTGGACATTGCCGGAGCAGAGGATGTACCATTACCAGTGAGGTCAGTTGCTTTAGATTCTCACCGTCTTGCATCAAAGTCTACCGCTCATGCTTCTCCAGTTGCTAACATTTCTGAGGGAGATGAAAATGATCAGACTTGGGTTATGCATGATGACGACGACGATGATGAAAATATCGCAATGGAAGAACGTCTTTTGGCCAAGGATGCTAGTGCTTCAGAAGGAGATGAGGGTGGTGATATGGGCGCGTCTCAAATCCTAGTATACCATGAAACAGTGGAGTCTCAAATCCTGCAACTTAATTATGTTGGCTCTGTGCAATTAGGAGATCATCATAAAGAGGTTCAAATGGCACTGAGGCACAACCTTATGAGGGAGCATCAAGATGTAATCGTAATTGAGAGCACACCTGCAAAGTTAAGCATAAAATGTGCGGCGTATGATAAGGGTTGTCCGTGGCGCGTTAGGGCAATAAAACAAGTGTTTGATGAAAATTGGAAGATTTCTAGATGGGGTGGGGATCACAATTGTTTGAATGACCACATTTCTCAAGGTCATAGACAGCTCGATGCTGACATCATTGCGGAGCTCGTTCTAGATGATATTGTGCTTATTGATGAGACGAAAGACAATGTTAATAAGAAACTTGATTTATGGAGAAGCACTTTGGAGTATAAAGTTTTCACGTTAAGCCGGAGCAAGACTGAGTATATGAAGTGTGAGTTTTCTCTAGTAAAAGATGGAGATCAAGACCCTGTGCATCTACTTGGTCAAGAGAAGGGAATGGAGAAGGAGAAACAAGTGCCATCCAATGTGGGACTTCAAAGTGAAGGATCAACTGCAATTGACGAAGCCCTTCCCGGGTGCAAAAACACTTGTGGAAATGTTTCCATTCCATATCCATTTGGCATAGGCGCGTCAACTGTCACCGGTAAAAACTGTTTCTTGGAGGAAGGATTGCAACTTAGGTGCGACAACAAGTCTACTTTATATGACGGTACTCGCGGTAATGTTCAAATTTTGAACATAACCCTCCAAGGTCAAATGGACCTGTTATTTTTCGTCTCCAAGGTTTGCAAAATAGGATTCGATAGAAAAGAAACACAAGGTAATGAACCCTACCTTAGAACCCCAGCTTACACCATTTCTAGCGAGCATAACAAGTTTGTGAGTGTAGGATGTGACACTTATGGTTATCTAAATAGTTTTCATGACGGTGATAAATATTCAACGGGGTGCTTAACAAGATGTAATAGCATAGTTGATATGCAAAGCGATGGAAACTGCACGGGGATAGGATGTTGCCAGGTTGATATTCCTCCTGGAATGAAGAATATTACTTTACAAGCATTTAGCTTCAACAACTTCAATGACTCTTCGGAATTCAACAATTGCAGCTCTTCCTTTGTTGTCAAAAAAGGTTACTATAATTTCTCTTCGAGTCATTTAGAGGATTTCCCATACGAGAATGTTCCCTTAGTAGTTGATTGGGCTGTTGGAAATGAGTCAAATGACACGTGTGAAAAATCAAGGAGGGAACCCAACTATGCATGCAAGAAGAATAGCGATTGTGAGGACTCGGCCACTGGATATGGTTACCGATGCAAATGTAAACAAGGTTACCAGGGAAACCCATTTCTTCCTGATGGTTGCCGAGACATTGAGGAATGTAAGAATGGTTTACATGACTGCATAAGCGATCAAAATTGTCGTGAAACCGAAGGGAGTTTTGAATGTTTCTGCCCTGATGGACAATTCGGAAATGGAAAAAGGGAAGGTGGAGGATGCCAACAAAAGCGAGACGCTGCACTTACCAAGATTCTCATTGGTGCAGGTGCAGGATTAATGGCTCTATTTGTGATGATTTCTTGGCTATACCTTATATTCCAGAAAAGGAAACTCATCAAACTGAAGGAGAAGTTCTTTAAGCAAAATGGGGGTATCATTTTGCAACAGCGACTCTCTGCAGGAGAGAACACTTCTCAATCTACCACATTGTTCACAGCAGAGCAACTTAAGAAGGCCACCAACAATTATGATGAGAGCTTAATCATCGGCAGAGGAGGTTATGGTACTGTTTACAAAGGAGTTTTGTCAGATAAGAGTATTGTTGCCATCAAGAAATCCAAAATTGTGGATCAGAGCCAAATTGAGCAATTCATAAACGAGGTGATTGTGCTATCACAAATTAATCACAGGAATGTGGTCAAACTTTTGGGTTGTTGTTTAGAGACAGAAGTTCCTTCACTGGTTTATGAATTTGTTAACAATGGTACCCTTTTTGATTATATACACAATGAAGGCAAGTCAGGTAATGTACCTTGGAAAACACGTCTAAGGATAGCAGCAGAGGCAGCAGGGGCCCTATCTTATCTGCACTCAGCTGCTTCTATACCAATTATACATAGAGATGTGAAGACTCCCAACATTCTCTTGGATGATAGTTACACTACCAAAGTGTCTGATTTTGGAGCATCAAGATTGGTTCCTCTTGATCAAACTGAATTAGCCACAATGGTGCAAGGAACTATTGGTTATTTGGACCCAGAGTACATGCAAACGAGCCAACTTAATGAGAAAAGTGATGTGTATAGCTTTGGAGTAGTACTTATAGAGCTGCTTACAGGGGAGAAACCTCTTTGTTTTGACAGGTCAGAAGAGAAAAGAAGTCTTGCTATGCACTTTCTATCTTGCTTGAGAGAGGATCGCTTGTTTGAGGTTCTTCAATTTGGCATTTTGAATGTAGAAAATAAGGAGGAGATCAAGGAGGTTGCTATTCTTGCAACAAAGTGCTTGAGACTAAGAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGCAATGGAGTTGGAGGGAATAAGGCTAATGGAAAAGCATCCATGGATCAACACAGACGTGAATCTAGAGGAGACTCATTACTTGCTTCATGAGGCATCATCTAGCATTCATGAACATGGTGATAGTAGCAGCCATCAAAATAGTGGCTATGACAGCATCAAAGATCATGTACTCATTGACTTCGATGATGGAAGATGA 3045 0.4141 MELYVDIAGAEDVPLPVRSVALDSHRLASKSTAHASPVANISEGDENDQTWVMHDDDDDDENIAMEERLLAKDASASEGDEGGDMGASQILVYHETVESQILQLNYVGSVQLGDHHKEVQMALRHNLMREHQDVIVIESTPAKLSIKCAAYDKGCPWRVRAIKQVFDENWKISRWGGDHNCLNDHISQGHRQLDADIIAELVLDDIVLIDETKDNVNKKLDLWRSTLEYKVFTLSRSKTEYMKCEFSLVKDGDQDPVHLLGQEKGMEKEKQVPSNVGLQSEGSTAIDEALPGCKNTCGNVSIPYPFGIGASTVTGKNCFLEEGLQLRCDNKSTLYDGTRGNVQILNITLQGQMDLLFFVSKVCKIGFDRKETQGNEPYLRTPAYTISSEHNKFVSVGCDTYGYLNSFHDGDKYSTGCLTRCNSIVDMQSDGNCTGIGCCQVDIPPGMKNITLQAFSFNNFNDSSEFNNCSSSFVVKKGYYNFSSSHLEDFPYENVPLVVDWAVGNESNDTCEKSRREPNYACKKNSDCEDSATGYGYRCKCKQGYQGNPFLPDGCRDIEECKNGLHDCISDQNCRETEGSFECFCPDGQFGNGKREGGGCQQKRDAALTKILIGAGAGLMALFVMISWLYLIFQKRKLIKLKEKFFKQNGGIILQQRLSAGENTSQSTTLFTAEQLKKATNNYDESLIIGRGGYGTVYKGVLSDKSIVAIKKSKIVDQSQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPSLVYEFVNNGTLFDYIHNEGKSGNVPWKTRLRIAAEAAGALSYLHSAASIPIIHRDVKTPNILLDDSYTTKVSDFGASRLVPLDQTELATMVQGTIGYLDPEYMQTSQLNEKSDVYSFGVVLIELLTGEKPLCFDRSEEKRSLAMHFLSCLREDRLFEVLQFGILNVENKEEIKEVAILATKCLRLRGEERPSMKEVAMELEGIRLMEKHPWINTDVNLEETHYLLHEASSSIHEHGDSSSHQNSGYDSIKDHVLIDFDDGR 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3653g00002 1014 CDD STKc_IRAK 689 956 - -
Gabi3653g00002 1014 CDD EGF_CA 557 588 - -
Gabi3653g00002 1014 ProSiteProfiles EGF-like domain profile. 557 592 IPR000742 -
Gabi3653g00002 1014 ProSiteProfiles Protein kinase domain profile. 683 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3653g00002 1014 Pfam Calcium-binding EGF domain 557 589 IPR001881 GO:0005509
Gabi3653g00002 1014 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Gabi3653g00002 1014 FunFam Wall-associated receptor kinase 2 759 976 - -
Gabi3653g00002 1014 SUPERFAMILY Protein kinase-like (PK-like) 664 954 IPR011009 -
Gabi3653g00002 1014 Pfam Protein kinase domain 685 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3653g00002 1014 Pfam Wall-associated receptor kinase galacturonan-binding 293 352 IPR025287 GO:0030247
Gabi3653g00002 1014 Gene3D Phosphorylase Kinase; domain 1 650 758 - -
Gabi3653g00002 1014 SMART serkin_6 683 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3653g00002 1014 Gene3D Laminin 507 598 - -
Gabi3653g00002 1014 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 285 966 IPR045274 GO:0007166
Gabi3653g00002 1014 SMART egf_5 510 556 IPR000742 -
Gabi3653g00002 1014 SMART egf_5 560 601 IPR000742 -
Gabi3653g00002 1014 Gene3D Transferase(Phosphotransferase) domain 1 759 974 - -
Gabi3653g00002 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Gabi3653g00002 1014 SUPERFAMILY EGF/Laminin 557 592 - -
Gabi3653g00002 1014 FunFam Wall-associated receptor kinase 2 653 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3653g00002 Gabi-Chr3653 23667 32404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3653g00002 293 1014 Receptor kinase-like Gene Family AT1G21230 45.862 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3653g00002 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3653g00002 - - gmx:100819535 1043.49