Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3653g00001 ATGAGGTTCTCTGGCCAAATTGCAGCTCAAGCAACTAGTCAATCATATATATCCCTTTCTGCAGTAACAACTGAAGCCATAATGGAACTGAAGCAGAAGCACACGCAACTGGGCAAGGTGTTAATGGTTGCATTAGCCCTTCTAGTATCATCATCAGTTGCTGCTGATCAAGCCCTTCCTGGCTGTAATGACACTTGTGGAGATGTCAAAATTCCGTATCCATTCGGCACAGGCATGTCATCTACATCAGATCATAAGTTATGTTTCTTGCATGATGGATTTAGCCTTACTTGCAATAACTCCATATTATATTTGGGTAACGTCCAAGTTTTAAACATAAGCGTCCAAGGTCAAATGGACTTATTGTTTTTCGTCTCATCACCAAATTGCTATAGCAAAGGTGGAAAATTCAACTCCGGGAACTATCCCACGCTCGAATTTGCTAATTTCAGCATTTCAAGGAAGGAAAACAAGTTCCTAACTGTTGGATGCAATAGTTTTGGATATCTCAATAGCTTTTACAACAGCGAGTTATATTCAACTGGGTGCTTATCAAGATGTTATGGCAATGAAAGGAAAATCGATAATGGAACGTGTTCCGGCATAGGGTGCTGCCAGGTGGATATTCCTCCTTCAATGAGGAATATCAGCATACAAGCAGATAGCTTCTCCAATTCAATGGAATATTGGGGAAACTGCAGCTATTCCTTTGTTGTCAAAGATGGCAACTATACTTTTAACACCAATCATTTATATGATTTCCCTTACAAGATGCTCCCCATGGTTGTTGATTGGACCGTAGGAAACCAAGGTTGTGACGCTTCCAAAAGCAGAGTCGACTATGCATGCATGAAAAATACCTATTGCAACGACAAGGACACTGATCTTGGTTACCGATGCATATGTAATGAAGGTTATGAAGGAAATCCATACCATCCGGATGGTTGCAGAGATATTGATGAATGTAAGACATCAAAGAATACATGCCTAAGTGAAAATAATTGTCACAACACCGATGGGTCTTACAAATGTTTCTGTCCTAAGGGGCAATCCGGAGATGGAACAAAGAACGGAGGGTGCCACCGACGAGATATAGTTACCCAGATTGTCATTGGAACAGGTGCAGGATTCATACTTCTAATTGTGGGATTTTCCTCGCTGTACTTAATATACGAGAAAAGGAAACTCGTCAAACTGAAGCAGAAGTTCTTTAAGCAAAATGGCGGTATCATTTTGCAACAGCGACTCTCTGCAGGAGAAAACACTTCTCAATCTACTACAGTGTTCTCAGCAGAGCAACTTAAGAAGGCCACCAATAATTATGATGAGAGCTTAATCATCGGCAGAGGAGGTTACGGTACAGTTTATAAAGGAGTTTTGTCAGATAAGAGGATTGTTGCCATCAAGAAGTCCAAAATTGTGGATCAGAGCCAAATTGAACAATTCATAAACGAGGTGATTGTGCTATCACACATTAATCATAGGAATGTGGTCAAACTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCTTCTCTGGTTTATGAATTTGTTAACAATGGTACCCTTTTTGATTATATACACAAAGAAGGCAAGTCAGGTAATGTACCTTGGAAAACACGTCTAAGGATAGCAGCAGAGGCAGCAGGGGCCCTATCATATCTGCACTCAGCTGCTTCTATACCAATTATACATAGAGATGTGAAGACTGCCAACATTCTCTTGGATGACACTTACACTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCTCTTGATCAAACTGAATTAGCCACAATGGTGCAAGGAACTATTGGTTATTTGGACCCAGAGTACATGCAAACAAGCCAACTTACTGAGAAAAGTGATGTGTATAGCTTCGGAGTAGTGCTTGTAGAGCTGCTTACAGGGGAGAAACCTCTTTGTTTTGACAGGTCCGAAGAGAAAAGAAGTCTTGCTATGCACTTTCTATCTTGCTTGAGAGAGGATCGCATGTTTGAGGTTCTTCAGGTTGGAATTTTGAATGTAGAAAATAAGGAAAAGATCAAGGAGGTTGCTATTCTTGCAACAAAGTGCTTGAGACTAAGAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGCAATGGAGTTGGACGGAATAAGGCTAATGGAAAAGCATCCATGGATCAACACAGACGTGAATCTAGAGGAGACTCATTACTTGCTTCATGAGGCATCATCGAGCATTCGTGAACATGGTGATAGCAGCAGCCATCAAAATACTGGGTATGACAGCATCAAGGATCATGTACTCGTTGACTTCGATGATGGAAGATGA 2319 0.4118 MRFSGQIAAQATSQSYISLSAVTTEAIMELKQKHTQLGKVLMVALALLVSSSVAADQALPGCNDTCGDVKIPYPFGTGMSSTSDHKLCFLHDGFSLTCNNSILYLGNVQVLNISVQGQMDLLFFVSSPNCYSKGGKFNSGNYPTLEFANFSISRKENKFLTVGCNSFGYLNSFYNSELYSTGCLSRCYGNERKIDNGTCSGIGCCQVDIPPSMRNISIQADSFSNSMEYWGNCSYSFVVKDGNYTFNTNHLYDFPYKMLPMVVDWTVGNQGCDASKSRVDYACMKNTYCNDKDTDLGYRCICNEGYEGNPYHPDGCRDIDECKTSKNTCLSENNCHNTDGSYKCFCPKGQSGDGTKNGGCHRRDIVTQIVIGTGAGFILLIVGFSSLYLIYEKRKLVKLKQKFFKQNGGIILQQRLSAGENTSQSTTVFSAEQLKKATNNYDESLIIGRGGYGTVYKGVLSDKRIVAIKKSKIVDQSQIEQFINEVIVLSHINHRNVVKLLGCCLETEVPSLVYEFVNNGTLFDYIHKEGKSGNVPWKTRLRIAAEAAGALSYLHSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTELATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPLCFDRSEEKRSLAMHFLSCLREDRMFEVLQVGILNVENKEKIKEVAILATKCLRLRGEERPSMKEVAMELDGIRLMEKHPWINTDVNLEETHYLLHEASSSIREHGDSSSHQNTGYDSIKDHVLVDFDDGR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3653g00001 772 FunFam Wall-associated receptor kinase 2 517 734 - -
Gabi3653g00001 772 SMART egf_5 321 361 IPR000742 -
Gabi3653g00001 772 SMART egf_5 271 317 IPR000742 -
Gabi3653g00001 772 Gene3D Plasmodium vivax P25 domain 262 366 - -
Gabi3653g00001 772 SMART serkin_6 441 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3653g00001 772 ProSitePatterns Calcium-binding EGF-like domain signature. 318 344 IPR018097 GO:0005509
Gabi3653g00001 772 FunFam Fibrillin 2 313 358 - -
Gabi3653g00001 772 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 335 346 IPR000152 -
Gabi3653g00001 772 FunFam Wall-associated receptor kinase 2 411 516 - -
Gabi3653g00001 772 SUPERFAMILY EGF/Laminin 318 353 - -
Gabi3653g00001 772 CDD EGF_CA 318 353 - -
Gabi3653g00001 772 Pfam Calcium-binding EGF domain 318 356 IPR001881 GO:0005509
Gabi3653g00001 772 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 52 724 IPR045274 GO:0007166
Gabi3653g00001 772 ProSiteProfiles Protein kinase domain profile. 441 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3653g00001 772 SMART egfca_6 318 361 IPR001881 GO:0005509
Gabi3653g00001 772 Pfam Wall-associated receptor kinase galacturonan-binding 62 118 IPR025287 GO:0030247
Gabi3653g00001 772 CDD STKc_IRAK 447 714 - -
Gabi3653g00001 772 SUPERFAMILY Protein kinase-like (PK-like) 422 711 IPR011009 -
Gabi3653g00001 772 ProSitePatterns Protein kinases ATP-binding region signature. 447 470 IPR017441 GO:0005524
Gabi3653g00001 772 Gene3D Transferase(Phosphotransferase) domain 1 517 732 - -
Gabi3653g00001 772 ProSiteProfiles EGF-like domain profile. 318 356 IPR000742 -
Gabi3653g00001 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 562 574 IPR008271 GO:0004672|GO:0006468
Gabi3653g00001 772 Gene3D Phosphorylase Kinase; domain 1 407 516 - -
Gabi3653g00001 772 Pfam Protein kinase domain 443 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3653g00001 Gabi-Chr3653 10712 14833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3653g00001 41 772 Receptor kinase-like Gene Family AT1G21230 45.406 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3653g00001 Pkinase 2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3653g00001 - - gsj:114381577 1020.76