Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3651g00003 ATGGAGTCTTGGATTTATGTTTCAGAAGAAAAAGGGTATGTTTCTAATGATGCACTTTCTCCTCCTAATACGCTTGGGAGAAGCAAAGGTTCATTCTTGGGTTGGGAACTGAAAACCCCATGTAGTTTTTCCAATGACATGTTGGCCTTGGGTCAGCAAAACATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGGAATGTTGGGGAAACAATTCTCTGATGATCCTAGTGGTACTGTTCATAGCAGAAAGATGGATAGTGGTGCTGACTGCAGAATTTCTAATCCTGTTGTGGCTGCCCCAAATGCATTTTCTGCAAGAGAGGACTTCAATTCCAAGCTTTCAAACTCTCTGGGGGACTCTAATTGTTGCAATTCCCTCATTGATTTGAAACTGGGTCGATTTAATGATCATGGAGATGCCATGGATCCAATATTTTCCAAGGGAACTCCCATTTTGTCTTCATCTGAGTCATCGACACCGCCCAAGAGGGTAAGAGCTTCAGGGGTCCACTCTCAAACTACATACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGCTTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTTATAGTGAACGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGAGGCGAAGAAAGCCACAAGTCAGTATTCACTCTGGAAAAGCTGGGAGGTTGCTTCAGCCATATGATCCTGTGGTTCTTGCAGATGGCAGATTCCAGGGAACCATGCTAACATCATCATCTTTTATCTGCCAAGAGATACTCCCCAGCGGGGTCTTATCTTTTGAGAAACATGGAACAAGTGACTGGTGGAGACCTATAAAAGCCGAAGATAGCACTGGTTATAGGCATCTTTCTTCTATTCCAACTACCAATGGACATCATCAGTCAAGGTCTCTATTTCCTTCATATAGTGAAAAACAATTTCCCTTTCTTCAGGAAAATGGTGCTACATCTGCCACAGGAAAGATCTTCTGTGAAAATAATAGTCAATATCCACCTGCCCTCACGTCGCAATCATTATTCCAGAACACTTCCTCAGGAAGCGAAGACTTCAATGTTTTTGATACAGAATCAACTGTTCAAGGATTATCGGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCGTCAAGCCAATCATCAGGAATTCCCATGGCTCACCACTTGGTTATTCCAAGCAGCCATAGCCATTACAGCATGAATCAGGTCTCTGAAAAGATGATAGGATTAAGTTCACAGGGTTCTAGTGGAGTGTCGGATAGGTTTCCATCTGAATTGAATCCTGCAGATGGAAGTCATCTTAGTCCTATACTGATATCAGACAATAATGAAATTGTCAACTTTGGAATGGCTGATGGGATTTTCCAAGGGTCAGATTTTGTGAATGTGAAAAATCGTCTTTCTTATGAAGATGGCTCCACCATTGACTTGCTTCAACTGTCATCACAACTTCAGCGAGTTGAGCATCAGAGACGATCCTTGCACGTGAAGCAAGAAAATGATTCTTCCTGCTCTCTCCGGATTACTTAA 1671 0.4267 MESWIYVSEEKGYVSNDALSPPNTLGRSKGSFLGWELKTPCSFSNDMLALGQQNIENQGFEELGFPGMLGKQFSDDPSGTVHSRKMDSGADCRISNPVVAAPNAFSAREDFNSKLSNSLGDSNCCNSLIDLKLGRFNDHGDAMDPIFSKGTPILSSSESSTPPKRVRASGVHSQTTYCQVYGCNKDLSACKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVSIHSGKAGRLLQPYDPVVLADGRFQGTMLTSSSFICQEILPSGVLSFEKHGTSDWWRPIKAEDSTGYRHLSSIPTTNGHHQSRSLFPSYSEKQFPFLQENGATSATGKIFCENNSQYPPALTSQSLFQNTSSGSEDFNVFDTESTVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPMAHHLVIPSSHSHYSMNQVSEKMIGLSSQGSSGVSDRFPSELNPADGSHLSPILISDNNEIVNFGMADGIFQGSDFVNVKNRLSYEDGSTIDLLQLSSQLQRVEHQRRSLHVKQENDSSCSLRIT 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3651g00003 556 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 105 540 IPR044817 GO:0003677
Gabi3651g00003 556 SUPERFAMILY SBT domain 176 256 IPR036893 GO:0003677|GO:0005634
Gabi3651g00003 556 Gene3D - 168 239 IPR036893 GO:0003677|GO:0005634
Gabi3651g00003 556 FunFam Squamosa promoter-binding-like protein 14 169 239 - -
Gabi3651g00003 556 ProSiteProfiles Zinc finger SBP-type profile. 175 252 IPR004333 GO:0003677
Gabi3651g00003 556 Pfam SBP domain 178 251 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3651g00003 Gabi-Chr3651 26492 31933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3651g00003 129 299 SBP-box Gene Family AT1G69170 54.971 7.95e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi3651g00003 SBP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3651g00003 - - gmx:100777766 871.692