Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3651g00001 ATGGAGTCTTGGATTTATGTTTCAGAAGAAAAAGGGTATGTTTCTAATGATGCACTTTCTCCTCCTAATACGCTTGGGAGAAGCAAAGGTTCATTCTTGGGTTGGGAACTGAAAACCCCATGTAGTTTTTCCAATGACATGTTGGCCTTGGGTCAGCAAAACATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGGAATGTTGGGGAAACAATTCTCTGATGATCCTAGTGGTACTGTTCATAGCAGAAAGATGGATAGTGGTGCTGACTGCAGAATTTCTAATCCTGTTGTGGCTGCCCCAAATGCATTTTCTGCAAGAGAGGACTTCAATTCCAAGCTTTCAAACTCTCTGGGGGACTCTAATTGTTGCAATTCCCTCATTGATTTGAAACTGGGTCGATTTAATGATCATGGAGATGCCATGGATCCAATATTTTCCAAGGGAACTCCCATTTTGTCTTCATCTGAGTCATCGACACCGCCCAAGAGGGTAAGAGCTTCAGGGGTCCACTCTCAAACTACATACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGCTTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTTATAGTGAACGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGAGGCGAAGAAAGCCACAAGTCAGTATTCACTCTGGAAAAGCTGGGAGGTTGCTTCAGCCATATGGTGATGGCAGATTCCAGGGAACCATGCTAACATCATCATCTTTTATCTGCCAAGAGATACTCCCCAGCGGGGTCTTATCTTTTGAGAAACATGGAACAAGTGACTGGTGGAGACCTATAAAAGCCGAAGATAGCACTGGTTATAGGCATCTTTCTTCTATTCCAACTACCAATGGACATCATCAGTCAAGGTCTCTATTTCCTTCATATAGTGAAAAACAATTTCCCTTTCTTCAGGAAAATGGTGCTACATCTGCCACAGGAAAGATCTTCTGTGAAAATAATAGTCAATATCCACCTGCCCTCACGTCGCAATCATTATTCCAGAACACTTCCTCAGGAAGCGAAGACTTCAATGTTTTTGATACAGAATCAACTGTTCAAGGATTATCGGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCGTCAAGCCAATCATCAGGAATTCCCATGGCTCACCACTTGGTTATTCCAAGCAGCCATAGCCATTACAGCATGAATCAGGTCTCTGAAAAGATGATAGGATTAAGTTCACAGGGTTCTAGTGGAGTGTCGGATAGGTTTCCATCTGAATTGAATCCTGCAGATGGAAGTCATCTTAGTCCTATACTGATATCAGACAATAATGAAATTGTCAACTTTGGAATGGCTGATGGGATTTTCCAAGGGTCAGATTTTGTGAATGTGAAAAATCGTCTTTCTTATGAAGATGGCTCCACCATTGACTTGCTTCAACTGTCATCACAACTTCAGCGAGTTGAGCATCAGAGACGATCCTTGCACGTGAAGCAAGAAAATGATTCTTCCTGCTCTCTCCGGATTACTTAA 1656 0.4263 MESWIYVSEEKGYVSNDALSPPNTLGRSKGSFLGWELKTPCSFSNDMLALGQQNIENQGFEELGFPGMLGKQFSDDPSGTVHSRKMDSGADCRISNPVVAAPNAFSAREDFNSKLSNSLGDSNCCNSLIDLKLGRFNDHGDAMDPIFSKGTPILSSSESSTPPKRVRASGVHSQTTYCQVYGCNKDLSACKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVSIHSGKAGRLLQPYGDGRFQGTMLTSSSFICQEILPSGVLSFEKHGTSDWWRPIKAEDSTGYRHLSSIPTTNGHHQSRSLFPSYSEKQFPFLQENGATSATGKIFCENNSQYPPALTSQSLFQNTSSGSEDFNVFDTESTVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPMAHHLVIPSSHSHYSMNQVSEKMIGLSSQGSSGVSDRFPSELNPADGSHLSPILISDNNEIVNFGMADGIFQGSDFVNVKNRLSYEDGSTIDLLQLSSQLQRVEHQRRSLHVKQENDSSCSLRIT 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3651g00001 551 SUPERFAMILY SBT domain 176 256 IPR036893 GO:0003677|GO:0005634
Gabi3651g00001 551 Gene3D - 168 239 IPR036893 GO:0003677|GO:0005634
Gabi3651g00001 551 FunFam Squamosa promoter-binding-like protein 14 169 239 - -
Gabi3651g00001 551 Pfam SBP domain 178 251 IPR004333 GO:0003677
Gabi3651g00001 551 ProSiteProfiles Zinc finger SBP-type profile. 175 252 IPR004333 GO:0003677
Gabi3651g00001 551 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 105 535 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3651g00001 Gabi-Chr3651 26426 31933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3651g00001 129 294 SBP-box Gene Family AT1G69170 56.024 9.58e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi3651g00001 SBP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3651g00001 - - gmx:100777766 876.315