Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3648g00006 ATGGTGGGTGGTAACAGTAATTCGAGGCAATATCATGATACAACTTCTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAAAGGGACACAATGAGAAGGTATTTTGAGCAGTTTGGAGAGATTTTAGAGGCTGTTGTTATCACAGACAAGAACACTGGGAGATCAAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAAGCAGCAAAAAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAAGAAGAATCGCCCCCAAACTCCTCAACATGGACGGTTTAGACCAGCCCCTAGCATGTTGGCTTCACCTGCATATCATGGCCTTTCTTCTACATTTGTCCATCAAACCACTGGACAATACACATTTCCTTATTCAACATATACTGGACAATCGCAAGAAACAATGTACCCCATGAATTGTTATGGTGTGTATGGAGGTCAACAATTCTCAACTTACTATGCATCCAATGGAGCATCTGGGCCAGTGGGATTGATTCATAATATTTACCCTTTCAGTGCCCAGTATGGGTACAATAACCACCAATTACATGGTTTTGGAGTTCAATATCCCCAAATACTGCAGCTTCCATTTCTCCCTAGGCAATATGGTGCAGCTGGGATCATGACATATGCTTCTTCAATGGCAATGCCAACTACTAGTGCAGTTACAACAACAGCAACTACAACAACAACAGAGGCCACATCAACAGGTGAAGGTGCTTCAGAAGCGGCTGGAACAACTTCTGAACAAAATTCCTCAACTTAA 813 0.4244 MVGGNSNSRQYHDTTSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAKKACQNPSPIIDGRRANCNIASIGAKKNRPQTPQHGRFRPAPSMLASPAYHGLSSTFVHQTTGQYTFPYSTYTGQSQETMYPMNCYGVYGGQQFSTYYASNGASGPVGLIHNIYPFSAQYGYNNHQLHGFGVQYPQILQLPFLPRQYGAAGIMTYASSMAMPTTSAVTTTATTTTTEATSTGEGASEAAGTTSEQNSST 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3648g00006 270 MobiDBLite consensus disorder prediction 238 270 - -
Gabi3648g00006 270 Gene3D - 4 108 IPR012677 -
Gabi3648g00006 270 CDD RRM_RBM24_RBM38_like 17 92 - -
Gabi3648g00006 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Gabi3648g00006 270 PANTHER BOULE-RELATED 6 246 - -
Gabi3648g00006 270 SMART rrm1_1 18 90 IPR000504 GO:0003723
Gabi3648g00006 270 SUPERFAMILY RNA-binding domain, RBD 15 104 IPR035979 GO:0003676
Gabi3648g00006 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3648g00006 Gabi-Chr3648 47738 50245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3648g00006 13 93 C2H2 Transcription Factor Family AT2G19380 43.210 9.55e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3648g00006 - - gmx:100786226 381.719