Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3648g00001 ATGGCAGCTGAGACTTTGTGTCTCAGCTTCATTACACCTTCCACTTCAGTGCTGAGTCTCAAACACAAACACCAGTTCGCAGCTTCACCCAAACGATTCGTTTTACATTTTGGGCATCCAAGGTTATCATGTTTGGTCACCAGAACTCTAGAACCTTCTTCTTCTTCTTTCTCTCCTCTGAGGAAATCTGGACTTTATGCGGCGGCGTTGTTTGCAGAAGGGATTAACGGAGAAGAATCTGCGGAGCAACAAAACGATGACGTTTTTGGGGAGGAAGAAGAAGAAAGAGAGAAGAAGCTGGGAAGACCGTGTGAAGTATATGTGTGTAACCTCCCCAGAAGCTGTGACTCAGCACAACTACTTGATATGTTCAAGCCCCACGGAACCATTCTATCTGTTGAGATTTGCCGGAATGCTGAGACTGGTGAAAGTAGAGGATGTGGTTATGTTAAAATGGGATCTATAAACTCAGCAAGAAATGCAGCTGCTGCATTGGATGGATCAGATGTTGGCGGTCGTGATATGCGGGTTAGATTTTCAGTTGAGATGAATCCTGGAAGGAGGAATCCTGAGAAAATGAACTCTAATCCTAGGAAAGTTATATACTATGAAGCCCCTCATAAACTGTATGTTGGCAATCTTGCTAGGACTGTTAGACTTGAAGAGCTGAGAAATCTTTTTAGCAGATTTGGTAATGTGGCTAGTGCTAGAGTGATGTATGATCATAAACTAGGGAAAAACCGAGTCTTTGCGTTTCTCTCCTTTCAATCAAAGGCACAACGTGATGCAGCAATCTCTCTCCATGGAACAGAATTTTGTGGTCGCACTCTGATAGTTAGAGAGGGTGTAGAGAGGACTGAGCCTTAA 867 0.4371 MAAETLCLSFITPSTSVLSLKHKHQFAASPKRFVLHFGHPRLSCLVTRTLEPSSSSFSPLRKSGLYAAALFAEGINGEESAEQQNDDVFGEEEEEREKKLGRPCEVYVCNLPRSCDSAQLLDMFKPHGTILSVEICRNAETGESRGCGYVKMGSINSARNAAAALDGSDVGGRDMRVRFSVEMNPGRRNPEKMNSNPRKVIYYEAPHKLYVGNLARTVRLEELRNLFSRFGNVASARVMYDHKLGKNRVFAFLSFQSKAQRDAAISLHGTEFCGRTLIVREGVERTEP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3648g00001 288 SUPERFAMILY RNA-binding domain, RBD 103 195 IPR035979 GO:0003676
Gabi3648g00001 288 Gene3D - 75 203 IPR012677 -
Gabi3648g00001 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Gabi3648g00001 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Gabi3648g00001 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 175 IPR000504 GO:0003723
Gabi3648g00001 288 PANTHER OS02G0815200 PROTEIN 15 280 - -
Gabi3648g00001 288 SUPERFAMILY RNA-binding domain, RBD 206 285 IPR035979 GO:0003676
Gabi3648g00001 288 Gene3D - 204 288 IPR012677 -
Gabi3648g00001 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Gabi3648g00001 288 SMART rrm1_1 105 178 IPR000504 GO:0003723
Gabi3648g00001 288 SMART rrm1_1 208 280 IPR000504 GO:0003723
Gabi3648g00001 288 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 50 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3648g00001 Gabi-Chr3648 6162 8568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3648g00001 106 287 Eukaryotic Initiation Factors Gene Family AT3G16380 34.239 1.83e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3648g00001 - - gmx:100792560 323.553