Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3644g00001 ATGACTTCAATGACACCACTAGTTCCTTCCCCTTCTTCAGTTTTCATCAATCTATTGTCAAGTCAAGGTTGTTTTGTGGTCTTTGAGGAGGAAGTTGGAAACATATGTGCTTCAACGATTGTAGCAATTGTAGCAATTGTTGTCCCAAATGTTATTTTGGTGGCGCTTTTGGTTCTAGGCTGTTGCTGTTGCTGGAGAAGAAGGCGAAACAAAAACCATGATGCAGATCTAGAAATGGGAGATAGCACTAGGAATTATTTTACTTGTCAAGAAGAGTCTTTGCATTTTGACTTGGCTACAATTGAAGCTGCAACAAATAGGTTCTCGAATGAGAAGAAGATAGGCCAAGGTGGATTTGGTGTGGTTTATAAGGGTACCCTTCCTAATGGACAAGAGATAGCTGCAAAGAGGCTATACAGAAGCTCCTTGCAGGGTGACATAGAATTCAGGAACGAGGCTGCACTTGTTGCACTTCAACATAGAAATTTAGTTAGGATTTTGCTTGGAGGGAGCAGAGAGGATACTTATCATGAGAACCAAGCAGAGCTTGATTGGGCAACACGTTACCAAATTATAGTTGGGATTGCTGGAGGAGTTAAATACCTCCATGAAGATTCTAGTCTTAGAATAATACATCGCGATCTCAAGGCTAGTAATGTCCTATTAGATGACGAAATGAATCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTCCATGGAGACCAAAGTCAAGTTGACTCTACAACAGAAAGGATAGTTGGAACTTAG 771 0.4047 MTSMTPLVPSPSSVFINLLSSQGCFVVFEEEVGNICASTIVAIVAIVVPNVILVALLVLGCCCCWRRRRNKNHDADLEMGDSTRNYFTCQEESLHFDLATIEAATNRFSNEKKIGQGGFGVVYKGTLPNGQEIAAKRLYRSSLQGDIEFRNEAALVALQHRNLVRILLGGSREDTYHENQAELDWATRYQIIVGIAGGVKYLHEDSSLRIIHRDLKASNVLLDDEMNPKISDFGMAKIFHGDQSQVDSTTERIVGT 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3644g00001 256 ProSiteProfiles Protein kinase domain profile. 108 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3644g00001 256 SUPERFAMILY Protein kinase-like (PK-like) 88 256 IPR011009 -
Gabi3644g00001 256 Gene3D Phosphorylase Kinase; domain 1 70 172 - -
Gabi3644g00001 256 SMART serkin_6 108 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3644g00001 256 Gene3D Transferase(Phosphotransferase) domain 1 173 256 - -
Gabi3644g00001 256 Pfam Protein kinase domain 109 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3644g00001 256 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 256 - -
Gabi3644g00001 256 FunFam Os07g0541700 protein 174 256 - -
Gabi3644g00001 256 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Gabi3644g00001 256 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3644g00001 Gabi-Chr3644 3980 5249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3644g00001 41 256 Receptor kinase-like Gene Family AT4G23230 49.787 7.55e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi3644g00001 Pkinase 2.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3644g00001 - - ccaj:109806163 272.322