Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3643g00001 ATGAATGAGAACAGGATCGATTGTCTTGGACGGCTTCAACAAAGCCATGAACTAAAAGGTGATTTCAATTCTGAGTTTGGCAACCGTTCTTGTCAATATTTTGATACTAGACAGGTTTCAAATATGGGAAATTGTAATCAGCCACTAGCCATGGCCTGTGGTGGAATGGAACAATCGCCATATATTGGCTCAACCAAATCATCTAGCACAATTATCAGCCGTTTTGAGTCACCGGCTTCTGCCTTTTATGCAACAGAAATCTGCATGGGTTTCCCACAATATGATTGCCAAGTTGGTAATCCTTCTTTGACATCTCAATTCTCTAAGATTAATGATTTGGAATTCCCTTTGTATCAATCTCCCAGGGAAAACCTTTTCTTGGATTCAGCAAACCAACCTAGCCCCAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTGAAATCTCAATTGAATAGTGATCAATGTTGTAGGTCTCCTGAAAAATCTAATAAAACCCCATCTGGGAATTTTTCTGGGGGCAGTTTTCTTCCATTTGAACAACATAAATTGTTCATTGATGATGCTACCACAGTTAGTAGGAACCCATCAATTCCTTGTAAAGGAAATCAGGATCACTCAGTTCCTTGTGGCCCATACAATTTACCTGTTGCACAAATGAGCTTCTCTTCTCAGAAAGAAAAGCTGTCTCCAACACTCTCAGCAGGAAGTGTGTCAACCACTCCTAGAAACCCTGCTTCTAATGGGCCAGTAGTCTCAAGTAAAACACGCATAAGATGGACTCAGGATCTTCATGAGAAGTTTATTGAGTGCGTGAATCGCCTTGGAGGTGCTGAGAAGGCAACACCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATCTTCCATGTTAAAAGTCATTTGCAGAAATATAGAATTGCAAAATACATGCCAGAGTCAACTCAGGGGAAATCTGACAAAAGAACCCATGTAGAGAATGTGCATCTTGATGTCAAAACTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAGCTAGATGTTCAGAGGCGTCTTCATGAACAGCTGGAGATTCAGAGAAAATTACAGTTGCGGATTGAGGAACAAGGTAAGCAGCTAAAGAAGATGTTTGATCAACAACAGAAGACAAGTAATAGCATCTTGAATACTCAGAATTTGGACAATACAGCCAATAATGATAAACAACAAAGTCCTGAAGATGTTGAGGTTTCAATTTCTGATGGGTCAGGAATTTCCTTCTTCCCTTCTAAGATAAGTTAG 1287 0.4025 MNENRIDCLGRLQQSHELKGDFNSEFGNRSCQYFDTRQVSNMGNCNQPLAMACGGMEQSPYIGSTKSSSTIISRFESPASAFYATEICMGFPQYDCQVGNPSLTSQFSKINDLEFPLYQSPRENLFLDSANQPSPNFELSNPLQAMLKSQLNSDQCCRSPEKSNKTPSGNFSGGSFLPFEQHKLFIDDATTVSRNPSIPCKGNQDHSVPCGPYNLPVAQMSFSSQKEKLSPTLSAGSVSTTPRNPASNGPVVSSKTRIRWTQDLHEKFIECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPESTQGKSDKRTHVENVHLDVKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKKMFDQQQKTSNSILNTQNLDNTANNDKQQSPEDVEVSISDGSGISFFPSKIS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3643g00001 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 312 IPR017930 -
Gabi3643g00001 428 MobiDBLite consensus disorder prediction 154 173 - -
Gabi3643g00001 428 Pfam MYB-CC type transfactor, LHEQLE motif 338 385 IPR025756 -
Gabi3643g00001 428 Coils Coil 341 361 - -
Gabi3643g00001 428 MobiDBLite consensus disorder prediction 390 428 - -
Gabi3643g00001 428 MobiDBLite consensus disorder prediction 224 254 - -
Gabi3643g00001 428 SUPERFAMILY Homeodomain-like 253 309 IPR009057 -
Gabi3643g00001 428 Gene3D - 254 313 - -
Gabi3643g00001 428 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 224 404 IPR044848 GO:0003700
Gabi3643g00001 428 FunFam Myb family transcription factor 254 312 - -
Gabi3643g00001 428 Pfam Myb-like DNA-binding domain 259 308 IPR001005 -
Gabi3643g00001 428 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 310 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3643g00001 Gabi-Chr3643 30809 33330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3643g00001 238 382 G2-like Transcription Factor Family AT4G28610 58.108 1.68e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3643g00001 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3643g00001 - - gmx:102668541 614.764