Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3642g00047 ATGAGTCGGACTTCATTGATTTTGATAATAGGAATTTGCATAGGCTTTGTAGTTGGAGTGTGTTTGGCACTTTCAATTTTATTATGCTTCAGGTGTGGATGGAAGCGTACAAAGGTGGAGAAGAGCAGTTCTGAGAGAGCAGTGGCCATTCCTGCTCATGTAGAAGGGGTTTATTCAAGCTCAACATTATCAGACTCCAATGTGGGTCTGGAATCACCCGGAACATCTGAGTGGAGTAACATGCCTTTATGGTTGGAAGGACTTAGGAGAAAGAGTGTAGTTTCAGCATGTGGAATTCCCAAATATTCTTACAAAGATATGCAAAAGGCTACTTCTAATTTCACAACCATCATAGGCCATGGAGCGTTTGGTCCTGTTTACAAAGCACAGATGTCCACAGGTGAGACAGTTGCAGTTAAAGTTCTTGGTACTGATTCAAGACAAGGAGAAAATGAATTTTTAACTGAGGTCCTATTACTTGGAAGATTACACCACAAAAATCTTGTTGGTTTGGTAGGATATGCTGCAGAAAGAGAGCAGCGTATGCTCCTTTACAGTTACATGAGCAACGGCAATCTTGCTTCTCATTTATATGGCAAAAATCATGGGCCATTGTGCTGGGATGTGAGACTTAGCATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTTTGGGGCTGCTCCACCTGTTGTGCACCGTGACATCAAATCTTCCAACATACTGTTGGACCAGTTTATGAGAGCTAAGGTCACTGACTTTGGGCTCTCCAGACCTGAGACAATCAAACCTCGTATCTCAAATGTCAGAGGAACTTTTGGATATCTTGATCCTGAGTATATGTCTACCAAAACCTACACCAAGAAAAGTGATGTTTACAGTTATGGTGTGCTGCTGTTTGAGCTTATTACTGGCAGGAATCCACAGCAGGGGCTCATGGAATACGTAAAACTAGCAGCCATTGAAGGTGAAGGTAAGGTTGGATGGGAAGAAATTGTGGATTCGCAGCTGAATGGAAAATATGATGTGCATAAGCTTAATGTTATGGCTTCACTTGCATTCAAATGTGTCAATGAAGTCTCCAAAAGGAGACCTCCAATGAGGGAAGTTGTTCAAACATTATCTCAGCTTTGTAAGAAGCATGGTAGAAATCATAGCCGAACATCTACTTCTGCCTTAAAGGAAGTTTCCATTGAAGTGGACCAGCTAGAAACTCATAGCTTTTCATCAATTAAGTTTTCAAAGGAGCTGCGCAGATTGCATAGCCGATAA 1275 0.4173 MSRTSLILIIGICIGFVVGVCLALSILLCFRCGWKRTKVEKSSSERAVAIPAHVEGVYSSSTLSDSNVGLESPGTSEWSNMPLWLEGLRRKSVVSACGIPKYSYKDMQKATSNFTTIIGHGAFGPVYKAQMSTGETVAVKVLGTDSRQGENEFLTEVLLLGRLHHKNLVGLVGYAAEREQRMLLYSYMSNGNLASHLYGKNHGPLCWDVRLSIALDVARGLEYLHFGAAPPVVHRDIKSSNILLDQFMRAKVTDFGLSRPETIKPRISNVRGTFGYLDPEYMSTKTYTKKSDVYSYGVLLFELITGRNPQQGLMEYVKLAAIEGEGKVGWEEIVDSQLNGKYDVHKLNVMASLAFKCVNEVSKRRPPMREVVQTLSQLCKKHGRNHSRTSTSALKEVSIEVDQLETHSFSSIKFSKELRRLHSR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3642g00047 424 Gene3D Transferase(Phosphotransferase) domain 1 188 403 - -
Gabi3642g00047 424 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 395 - -
Gabi3642g00047 424 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3642g00047 424 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3642g00047 424 Gene3D Phosphorylase Kinase; domain 1 86 187 - -
Gabi3642g00047 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Gabi3642g00047 424 Pfam Protein tyrosine and serine/threonine kinase 114 375 IPR001245 GO:0004672|GO:0006468
Gabi3642g00047 424 SUPERFAMILY Protein kinase-like (PK-like) 99 379 IPR011009 -
Gabi3642g00047 424 FunFam serine/threonine-protein kinase PBS1-like 88 187 - -
Gabi3642g00047 424 PANTHER OS01G0750732 PROTEIN 6 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3642g00047 Gabi-Chr3642 483692 487896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3642g00047 98 379 Receptor kinase-like Gene Family AT3G19300 43.103 3.81e-75 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gabi3642g00047 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3642g00047 - - gmx:100816549 624.009