Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3642g00012 ATGGTGAGGGACCACATGCTCAAGAATGGTCCTTTGATTTGTGTTGGGAGGTTGAGAACTAATTCTCTTATGGACATTTCATCCACCAGAGGGTTACCTGATATGGAACTAATGGAGGATCCTACCTTTCTTCATCAGTGGAACTTAAGCTCTATTGATGAGCCTAGCTTACTGCCAATAGCTGCTGCTTTTGGAGAGACCTTACAACATCATTCATTCACTTACCCAAACTTCAGCCCCAAAATTGCTCAGACATCAGGGGCACAATTTGTTTCTTGTCCAAATCTTCTTTCCTTTGTGGATTCAAATCACATGAATCAGTTGGGACTGGTGACGCCTAAGGATGAGACCCTTTGGCCTAAAATCAATAGCACAACTCCTCCAGACATGACCTCTCAAGGAACCTTGGGGAATCAAAACTATGTCTTCAAGGCCTGCCAGGAGGTCAGAAAGATAGGGACACGTCCTAAACTTTCACAACCTCAAGACCACATAATAGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGAGGTTCATTGCTCTATCAGCACTTGTTCCTGGTCTACAAAAGACGGACAAAGCTTCTGTTCTTGGAGATGCTATCAAGCACTTGAAGCACTTGCAAGAGAAAGTGAGGGCTCTTGAGGAGGAACAGAACATGAAGAAAAATGTGGAATCTGTGGTAATTGTGAAAAAATCTCAACTATCCAATGATGTTGAAGACCCTTCTTCAGAATCTGGTGATCCCTTTGAAGAGGAAGTTCCTGAAATTGAAGCAAGATTTTGTGAGAGAAATGTCCTCATAAGAGTACACTGTGAGAAGAGCAAAGGAGTTGTAGAAAAAACAATCAATGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAGTACCATGACATTTGGTAGCTATGCGCTTGATATAACAATTATTGCTCAGATGGAAATGGAATTCTGCATGACAGTGAAGGATCTTGTGAGAAACCTACGCTCAGCTTTTACATCTTTCATGTGA 1017 0.4208 MVRDHMLKNGPLICVGRLRTNSLMDISSTRGLPDMELMEDPTFLHQWNLSSIDEPSLLPIAAAFGETLQHHSFTYPNFSPKIAQTSGAQFVSCPNLLSFVDSNHMNQLGLVTPKDETLWPKINSTTPPDMTSQGTLGNQNYVFKACQEVRKIGTRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKHLKHLQEKVRALEEEQNMKKNVESVVIVKKSQLSNDVEDPSSESGDPFEEEVPEIEARFCERNVLIRVHCEKSKGVVEKTINEIEKLHLKVINSSTMTFGSYALDITIIAQMEMEFCMTVKDLVRNLRSAFTSFM 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3642g00012 338 Coils Coil 198 228 - -
Gabi3642g00012 338 Gene3D - 159 233 IPR036638 GO:0046983
Gabi3642g00012 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Gabi3642g00012 338 PANTHER BHLH TRANSCRIPTION FACTOR 79 336 - -
Gabi3642g00012 338 SMART finulus 165 214 IPR011598 GO:0046983
Gabi3642g00012 338 CDD bHLH_AtNAI1_like 162 234 - -
Gabi3642g00012 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 223 IPR036638 GO:0046983
Gabi3642g00012 338 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3642g00012 Gabi-Chr3642 187526 195332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3642g00012 92 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.923 8.57e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3642g00012 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3642g00012 - - vun:114179595 447.588