Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3641g00001 ATGAATGGGAATTCTTATTTCAATCTAATAAAAGTGTGGAATGTTGGAGGAGATGGGGAAATAGTAAGAGTGCAAGTGATGAAGGATGATGGCAAGTTCAAATGGACAGATTTGAGGCAAAATTGGGGTCAGAATTGGGATACAGATGTTAGGTTAGTGGGAGAGAGATTGAGCTTCAGGGTGACAGCAAGTGATGGAAGGTCCAGTGTCTCAAGGCGTGTCGCCCCTAAGTATTGGCAGTTTGACATTATCTCCCCATGGAGATATGAAGCTTATAACAATTTTGAAGGAGGTCACAGAGTGGGCGTTACCCGCAAGCATCATCGCCCCAAGTTTAGCCCTAGCCAATGGAAGGAGGCTCATGCTACCTTCTATGAAGGAAACTCCGGAACATTTGGAGGAGCTTGTGGGTATCAAGATGTGGTTAAAGAAGGTTATGGGCTTGACACAACAGCATTGAGCACAGCTTTGTTCAACAATGGCCGGACATGTGGGGCATGTTTCCAGATCAAATGTGTAAACTCTCAATGGTGTAAAGGCCAATCCTCTATTTATGTCACAGCCACCGACCTTTGCCCTCCAAATTATAGTATACCAAGTGACAATGGAGGATG 614 0.4479 MNGNSYFNLIKVWNVGGDGEIVRVQVMKDDGKFKWTDLRQNWGQNWDTDVRLVGERLSFRVTASDGRSSVSRRVAPKYWQFDIISPWRYEAYNNFEGGHRVGVTRKHHRPKFSPSQWKEAHATFYEGNSGTFGGACGYQDVVKEGYGLDTTALSTALFNNGRTCGACFQIKCVNSQWCKGQSSIYVTATDLCPPNYSIPSDNGG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3641g00001 204 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 6 82 IPR007117 -
Gabi3641g00001 204 SMART dpbb_1 150 204 IPR007112 -
Gabi3641g00001 204 SUPERFAMILY Barwin-like endoglucanases 115 201 IPR036908 -
Gabi3641g00001 204 PRINTS Expansin signature 73 89 IPR002963 GO:0009664
Gabi3641g00001 204 PRINTS Expansin signature 44 65 IPR002963 GO:0009664
Gabi3641g00001 204 PRINTS Expansin signature 7 28 IPR002963 GO:0009664
Gabi3641g00001 204 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 133 204 IPR007112 -
Gabi3641g00001 204 SUPERFAMILY PHL pollen allergen 1 82 IPR036749 -
Gabi3641g00001 204 Pfam Lytic transglycolase 150 194 IPR009009 -
Gabi3641g00001 204 Gene3D - 1 88 IPR036749 -
Gabi3641g00001 204 Pfam Expansin C-terminal domain 1 76 IPR007117 -
Gabi3641g00001 204 PANTHER EXPANSIN-A15 1 82 IPR002963 GO:0009664
Gabi3641g00001 204 PRINTS Expansin/Lol pI family signature 154 172 IPR007118 GO:0005576
Gabi3641g00001 204 PRINTS Expansin/Lol pI family signature 116 131 IPR007118 GO:0005576
Gabi3641g00001 204 Gene3D - 101 202 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3641g00001 Gabi-Chr3641 38 3402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3641g00001 1 81 Expansin Gene Family AT3G55500 50.617 2.39e-20 84.3