Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3636g00001 ATGGAGAGAGCAAAACTCAATGTAAGATCAATATCCTTTGTTTTCCTGTTATTTCTGAGCTTCAAACCATTCTTTTCAAAGGCACAATCTCCAAACTATGTGGGAGATGATTGCCATAACACAACCCAAAAACCTCTCAGCAGTGCATACCAAACCAATCTTGATAGCATCCTCTCATGGCTATCGATTGATGCAGCCACAAGCAAAGGTTATAACCACACAATCATAGGCAACAACACTCTCAGAGATGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTGGCTGGATACTTTTGTCAATTCTGTGTCTCTACTGCTACCAGAGAAGTTCTTCAGCATTGTCCCAACAGAGTCTCTGCTGTTATATGGTATGATTTCTGCATTCTCAGGTACTCTAATGAGAACTTCTTTGGGAATGTTACTATAGACCCATCATGGCATGCTTTTGGAACAAAAAACATCTCTAGCTTAAATGAGAGTAAGAAAGGTGAGGATTTTATGAGAAGTCTGATCAGAAAAGCAACTAAGGAGACAAACCAGTTGTACTATATGAGTGAGTTCAACTTGAGTTCTACTCAGAAAAGGTATGGTCTGGTGCAATGCAGCAGAGATCTTACAAATGAAGGGTGCAGACAGTGTTTGGAGGCCATGTTAGCACAAGTTCCCAAATGTTGTGAACAAAAGATGGGTTGGCAGGTTTTGGCTGCAAGTTGTCTCATAAAGTATGATGATTATATGTTCTACCTTTTTCACAATCAACAATCTGCAGTTCCTGTGCCTAATTCTCAAACAGCCAAACAAGGGGTTACTAGTAAGTCGAGAAAATTGATCATTGGATTAAGTGTGCTGGGGTCAGTAGCTCTAGTATGTTTCGGTATTTACTGTTTCTGGTGCAGGATTAGAGTTAGAAAAGGTAATTTACTGTATGAGGAAACACTGAATACGGACCTGCCTACAATACCATTAATCACAATTCTACAGAGTACTGGTAATTTTTCACAAGCTTCTAAATTAGGGGAAGGTGGATTTGGCCCCGTTTACAAGGGAGTTCTACCAGATGGAAGAGAGATTGCAGTCAAAAGGCTCTCCAAAGCTTCTTGTCAAGGCTCAGAGGAGTTCAAGAATGAAGTAAAGTTTATTGCTAAATTGCAACATCGAAACCTTGTAAGACTTTTGGCATGCTGCTTGGATGAAAATGAAAAGTTACTTGTATATGAGTATTTGCCGAACTCAAGTCTCAACTTTCACCTATTTGATGATGAAAAAAAGAAGCAACTTGATTGGAAACTAAGATTAAGCATTGTCAATGGAATAGCAAGAGGCCTTTTATATCTTCACGAGGACTCTCGACTCAGAGTAATCCATAGAGATCTCAAAGCTAGCAATATTCTATTAGACCATGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAAGAGGCGAGAACGAGGCAAACACAAGAAGAGTAATGGGTACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGACTATTTTCAGTGAAATCTGATATTTTCAGCTTTGGAGTTCTTCTTGTGGAAATCATTTGTGGAAAAAGGAATAGTGGATTCCATCTATCAGAACGTGGTCAAAGTCTTCTTTCATATACTTGGAGAAAATGGTGTGAAGGAAAATGTTTGGAATTGATGGATTCGGTATTGGAAAAATCTTGCATAGCCAGTGAGGTTGTGAAGTGCATACACATTGGTCTGTTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCAAATGTTGTTGTAATGCTGGCAAGTGACACAATGGCCCTTCCAAAACCAAACCACCCCGCATATTCAGTTGGAAGAATGAACTCAGGGGAAGCATCTACTTCAAAAAGTTCCAACAATCCTTCCATTAATGACTTGACAGTCTCTAACATTTTACCAAGGTAA 1956 0.3957 MERAKLNVRSISFVFLLFLSFKPFFSKAQSPNYVGDDCHNTTQKPLSSAYQTNLDSILSWLSIDAATSKGYNHTIIGNNTLRDAVYGLYDCRGDVAGYFCQFCVSTATREVLQHCPNRVSAVIWYDFCILRYSNENFFGNVTIDPSWHAFGTKNISSLNESKKGEDFMRSLIRKATKETNQLYYMSEFNLSSTQKRYGLVQCSRDLTNEGCRQCLEAMLAQVPKCCEQKMGWQVLAASCLIKYDDYMFYLFHNQQSAVPVPNSQTAKQGVTSKSRKLIIGLSVLGSVALVCFGIYCFWCRIRVRKGNLLYEETLNTDLPTIPLITILQSTGNFSQASKLGEGGFGPVYKGVLPDGREIAVKRLSKASCQGSEEFKNEVKFIAKLQHRNLVRLLACCLDENEKLLVYEYLPNSSLNFHLFDDEKKKQLDWKLRLSIVNGIARGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARAFERGENEANTRRVMGTYGYMAPEYAMEGLFSVKSDIFSFGVLLVEIICGKRNSGFHLSERGQSLLSYTWRKWCEGKCLELMDSVLEKSCIASEVVKCIHIGLLCVQEDAADRPTMSNVVVMLASDTMALPKPNHPAYSVGRMNSGEASTSKSSNNPSINDLTVSNILPR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3636g00001 651 Pfam Domain of unknown function (DUF3403) 606 651 IPR021820 GO:0004674
Gabi3636g00001 651 SUPERFAMILY Protein kinase-like (PK-like) 318 630 IPR011009 -
Gabi3636g00001 651 ProSiteProfiles Protein kinase domain profile. 333 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3636g00001 651 CDD STKc_IRAK 339 604 - -
Gabi3636g00001 651 FunFam Cysteine-rich receptor-like protein kinase 28 34 136 - -
Gabi3636g00001 651 FunFam Liguleless narrow1 409 612 - -
Gabi3636g00001 651 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Gabi3636g00001 651 Pfam Protein tyrosine and serine/threonine kinase 336 603 IPR001245 GO:0004672|GO:0006468
Gabi3636g00001 651 Gene3D Transferase(Phosphotransferase) domain 1 409 613 - -
Gabi3636g00001 651 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
Gabi3636g00001 651 FunFam Cysteine-rich receptor-like protein kinase 10 146 248 - -
Gabi3636g00001 651 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 646 - -
Gabi3636g00001 651 MobiDBLite consensus disorder prediction 616 651 - -
Gabi3636g00001 651 Gene3D Phosphorylase Kinase; domain 1 297 408 - -
Gabi3636g00001 651 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 302 408 - -
Gabi3636g00001 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Gabi3636g00001 651 Pfam Salt stress response/antifungal 38 134 IPR002902 -
Gabi3636g00001 651 Pfam Salt stress response/antifungal 165 246 IPR002902 -
Gabi3636g00001 651 SMART serkin_6 333 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3636g00001 651 MobiDBLite consensus disorder prediction 624 651 - -
Gabi3636g00001 651 Gene3D - 149 248 IPR038408 -
Gabi3636g00001 651 Gene3D - 32 137 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3636g00001 Gabi-Chr3636 27349 31088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3636g00001 13 651 Receptor kinase-like Gene Family AT4G05200 42.152 1.66e-180 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3636g00001 PK_Tyr_Ser-Thr 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3636g00001 - - gmx:100795922 1029.62