Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3635g00068 ATGAGCAGCTTAAGGCCTGAATCTCATGTAGCGCAACAAATTCGGCGGGATAAATTGAGAATCCAGAACAGTTCACAGGAATTTCCTAACAATATGGAACAGTTATCATTATTACACCCTGGGTTTAACTTGGATCTTCTTCCAGTTAGGAATGTTAGGAATTCTAATTTGCTTGATGAAGAACCTGCTGTTTATTCATCAGAAATGCAAAACTTTTCAAACCCTTTGCAAAGGAACGGATTGGAGTATCAGGAACTAGGTGCAGCTGAATCTGGTAGCAGGCTAATGATGCATCAGTATGGTTCATTTCCTCATTCCTTGTCTGGTATTCATTCTTCTTCCCAAAAAGAACAGTGTAATTATTTGGGAAATTGGAGAAGCAGTGCACAGAATCAACAAGGTTGTGATTGGATTGTAAATTATGGAAGCAGTTCTCTGTCTGCTGCTGAGCTCAACAATGTGTCCACTTACAATGAAGTTACTGAAATACAATTTAACAATGCTTCTGGTGGAGAAATTCAAAAGCAATTAGGTGTAATGCATCATCATCATCATCCTCCTCATTCTTCTTCATCTCCACTTTATCAGAATGCTTTGCAGGATATTGTTAAGTCAGCTTCTATTAGTGCTCATGGATCAGACATGTCTTCACTGATGCAGCAGCAGCAGCAGCAAACTGGCCATGGCATTTGGGTAGGTGATGCTAATGAATTTGAACCTCAACCAAGCTATGGAAATCAGAATAATAATCCGTTGCGTTTTGGGTGGACAAATCGAACGGTTGATTCTAATCCTCAGAGCTTATCTTTATCATTATCATCAAATGCACAATCCAAGCCTTGTGTTTCTCAGTTTGAAGATGGGACTGCATCAGATGACCTTCAATCTGGAAGTGGCATTTCTAAGGATCCTCAATGTTTGAAGTATATGAAGTCTATTGTGAAGTCCTCTATAGAAGACACGGTTGGGTTAACTTCAAAGGCTAGTTATAGAAATGTGGGTCCCCTTGGCCCTTTCACCGGGTATGCTACTATTCTTAAGAGTTCAAGATTCTTAAAATCTGCTCAACAATTGTTAGATGAGTTTTGCTGTCTCTCTGGTTCAAAATTTGGGAAAACATGTGATGGTTCAGAAAGGGTCTCTGAAGATGTTAGTGCTTCTACTTCTGCTGATACTGTCACAGTCAATGAAACTGGGGTTGCCACAAATAATGCTAGTAATTCAGGTTCTTCATCATCTATGTTCTATATTTCAAACGAAAATAGTGCTGATATGGGAGCCGGAAGTGGTAGCTTTTGTCTTTCTTCGCGGCCGGATTATCAACAGAAGAAAGCAAAGCTACTGTACATGCAAGAGGAGGTTACAAGGCATTTCAAGCAGTACCATCAACAGATGCAAATGGTTGTTTCATCCTTTGAGTCAGTAGCGGGTCTTAGTTATGCTACTCCTTATATCTCGTTGGCTCTCAAGTCAATAACAAGACACTTCAGGTGCCTAAAAAATTCTATCTCAGATCAGCTTAAGCTTATAAGCGAAGTCTTGGGAGAGGATTTGTCAATACCTTCCACCAGCACTAGTAGCAAAGTTGACACTAACATGGAAAGGCTAAGGTGCATTGATCATAACTATCAGAAGAACAAATCTAGCAGAGTTGCCACGGGCCTTCTTGAACCCCAACAGCATGCTTGGAGGCCCCAGAGAGGCTTACCAGAACGTTCAGTGGCAATTCTCAGAGCTTGGTTATTTGAGCATTTTCTTCATCCTTACCCCACAGACACTGATAAACACATGTTGGCTACTCAAACAGGTCTTTCTCGAAACCAGGTATCAAATTGGTTTATAAATGCCAGAGTTCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAACAACAACAGGTGCCAACGAGAACTCTAGTAAAAATGAGGGAACTTCGTGCACTGAAGGTAGTACCAGACAGCCTAGAGTGGATAAGCCAATGAGCAAATTTGGCATGCATTCAATACCTGAAAACCAATATCAGGATATTGAAATGGGTTCATCATCCATAGCCACCAATGTGGAGGAAAGCGAGTTGAATGCAGAACAATGGAGTCAAGAGAAACGGTCTAGATTGGAATGTATGAATTCTAGCATGGATGGTACACTGATGGGTTTTGTGCCATATAGACGTGGTGGAATTGAGATTGGAGGACTTGGGTCTGTGTCACTAACATTGGGTCTTAGGCATGGCCATGTTGAAGGTGTGCAGCAACAACAACAACAACAATTGCAAGAGGAGCAGCTTAGACGTCACCTTGGAGGGCATATGATCAATGACTTTTAA 2340 0.4115 MSSLRPESHVAQQIRRDKLRIQNSSQEFPNNMEQLSLLHPGFNLDLLPVRNVRNSNLLDEEPAVYSSEMQNFSNPLQRNGLEYQELGAAESGSRLMMHQYGSFPHSLSGIHSSSQKEQCNYLGNWRSSAQNQQGCDWIVNYGSSSLSAAELNNVSTYNEVTEIQFNNASGGEIQKQLGVMHHHHHPPHSSSSPLYQNALQDIVKSASISAHGSDMSSLMQQQQQQTGHGIWVGDANEFEPQPSYGNQNNNPLRFGWTNRTVDSNPQSLSLSLSSNAQSKPCVSQFEDGTASDDLQSGSGISKDPQCLKYMKSIVKSSIEDTVGLTSKASYRNVGPLGPFTGYATILKSSRFLKSAQQLLDEFCCLSGSKFGKTCDGSERVSEDVSASTSADTVTVNETGVATNNASNSGSSSSMFYISNENSADMGAGSGSFCLSSRPDYQQKKAKLLYMQEEVTRHFKQYHQQMQMVVSSFESVAGLSYATPYISLALKSITRHFRCLKNSISDQLKLISEVLGEDLSIPSTSTSSKVDTNMERLRCIDHNYQKNKSSRVATGLLEPQQHAWRPQRGLPERSVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKTTTGANENSSKNEGTSCTEGSTRQPRVDKPMSKFGMHSIPENQYQDIEMGSSSIATNVEESELNAEQWSQEKRSRLECMNSSMDGTLMGFVPYRRGGIEIGGLGSVSLTLGLRHGHVEGVQQQQQQQLQEEQLRRHLGGHMINDF 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3635g00068 779 CDD homeodomain 563 624 IPR001356 GO:0003677
Gabi3635g00068 779 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 208 645 - -
Gabi3635g00068 779 ProSiteProfiles 'Homeobox' domain profile. 560 623 IPR001356 GO:0003677
Gabi3635g00068 779 SUPERFAMILY Homeodomain-like 565 630 IPR009057 -
Gabi3635g00068 779 Pfam Homeobox KN domain 580 619 IPR008422 GO:0003677|GO:0006355
Gabi3635g00068 779 SMART prehox3 340 505 IPR006563 -
Gabi3635g00068 779 SMART HOX_1 563 627 IPR001356 GO:0003677
Gabi3635g00068 779 MobiDBLite consensus disorder prediction 636 659 - -
Gabi3635g00068 779 Pfam Associated with HOX 345 504 IPR006563 -
Gabi3635g00068 779 Gene3D - 566 628 - -
Gabi3635g00068 779 MobiDBLite consensus disorder prediction 636 664 - -
Gabi3635g00068 779 FunFam BEL1-like homeodomain protein 9 566 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3635g00068 Gabi-Chr3635 545294 551864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3635g00068 346 748 Homeobox Transcription Factor Family AT4G34610 37.260 4.91e-68 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi3635g00068 POX 7.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3635g00068 - - gmx:100790583 897.501