Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3635g00051 ATGTATGAGGATATGGCTAATACAAAGGACTCTTGGTTTTTTGACAAGAATTTTAATGGTCTGTTAGATGAGACTTTTGATGATGTCATCAAGTTTTTTGATTTCCCACCTGAAGATGTGGAACCTAATGTTGTGGAAGAAGACTGGGATGCTCAATTTAAACGCCTTGAAGAGCCATGTTTTGATGTTTTTTCAGCATCATTAGGTGGGCTGCATGGCAAAACTCAAATTGAAAATCCCAAACTTGGGAAGAGTGTGTCTGTTTCTTGTAATGAGATTTCCCCAATAAAACAGCTGGCAAAGACTGCTGGACCAACATATGGAAAAACTGTTCCCAGCCAGAATGTCTCTTACCATGGGAAAGATTTGCATCAATTCCAAACCTACAGTCCAGTTTCTGTTTTTGAAAGCAGTAGTTCTGCCTCAGTAGAGAATTCCAACTTTGATCTATCTGTCATACCAGTAAAGCGGGCTCGAAGTAAACGCCTGTGTCGTTCAAGCTTCAGTCGTCTATTTTCAATTCCTTTCATCCCTTATTCACCAGCTTTGAAAAAATATCAGAGGACAGATGCCTCTGAATCAGATTTAGAAACACACCTTGCTGGGAAACTATTAAACAGAGAAAAAAAACAGAGGAAAAAGGATCTCTCCCTGCTATCTGGTGATGTTGAGATGAAGAGATCGTCATCACTGCATTCAGTTGCCTCAAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAGACACTGTGCAATGCTTGTGGCGTCCGATACAGGTCTGGCCGTCTCTTTCCGGAATACCGGCCTGCTGCTAGCCCCACTTTTGTAGCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAAGGTCATCTAG 918 0.4248 MYEDMANTKDSWFFDKNFNGLLDETFDDVIKFFDFPPEDVEPNVVEEDWDAQFKRLEEPCFDVFSASLGGLHGKTQIENPKLGKSVSVSCNEISPIKQLAKTAGPTYGKTVPSQNVSYHGKDLHQFQTYSPVSVFESSSSASVENSNFDLSVIPVKRARSKRLCRSSFSRLFSIPFIPYSPALKKYQRTDASESDLETHLAGKLLNREKKQRKKDLSLLSGDVEMKRSSSLHSVASRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSKVI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3635g00051 305 Gene3D - 233 283 IPR013088 GO:0006355|GO:0008270
Gabi3635g00051 305 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Gabi3635g00051 305 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Gabi3635g00051 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 295 - -
Gabi3635g00051 305 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Gabi3635g00051 305 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Gabi3635g00051 305 PANTHER GATA TRANSCRIPTION FACTOR 45 304 - -
Gabi3635g00051 305 FunFam GATA transcription factor 229 305 - -
Gabi3635g00051 305 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3635g00051 Gabi-Chr3635 302679 312824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3635g00051 15 303 C2C2-Gata Transcription Factor Family AT1G08010 37.459 3.23e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi3635g00051 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3635g00051 - - gmx:100778675 422.165