Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3635g00050 ATGAAGGAAGCTGAAAAGAGCTTGGATCCGCAACTATGGCACGCATGCGCCGGAAGCATGGTTCAGATGCCTCCGGTGAACACCAAAGTCTTCTACTTTCCTCAAGGGCATGCCGAGCACGCTCAAGCCAACGTTGATTTTGGAGCTTCCATGAGGATTCCACCACTCATTCTCTGCCGTGTGGCGACTGTGAAATTCTTGGCTGACCCAGAAACCGATGAAGTTTTTGCAAGGATGAGGTTGGTTCCTCTGAGAAATTCAGAGCTTGATTACGAAGATGGTGGTGCTCTTGACGGTGATCCCTCCGAGAGTTCAGAAAAGCCTGCATCTTTTGCCAAGACGTTAACTCAATCCGATGCAAACAATGGTGGGGGGTTCTCTGTTCCAAGGTACTGCGCGGAAACCATCTTTCCGAGGCTGGATTACTCGGCTGAACCACCGGTTCAGACGGTGATCGCCAAGGACGTTCACGGTGAAGTTTGGAAGTTTAGGCATATATATAGAGGCACGCCACGTCGCCACTTGCTTACAACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCAGGGGATTCTATCGTGTTTCTGAGGGCTGAAAATGGTGATCTCTGTGTTGGAATTCGTAGGGCCAAGAGGGGAATCGTTGGAGGTTCAGAGGCACCATCTGGGTGGAGCTCTGGTTCTGGAAGTTGTGGTCTTGGACCTTATGGGGCTTTCTGTGTTTTCCTCAGAGAGGAGAACAAGCCCTTGAGAAATGGTTGTGGGAACTCAAGTCCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCAATTTGAGTGGAAGAACAAAAGTGACTCATGAATCTGTTAGGGAAGCTATGACACTTGCTGCTAGCAATCAACCGTTTGAAGTTGTTTATTACCCGAGAGCAAGCACACCTGAGTTTTGCATTAAGACTTCAGCTGTGAGGGCTGCTATGAGGATTCAATGGGGCTCTGGGATGAGGTTTAAGATGCCCTTTGAAACTGAGGATTCTTCCAGGATAAGCTGGTTCATGGGGACCATATCTTCTGTTCAAGTTGTTGATCCTATCCGTTGGCCTAATTCCCCTTGGCGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTAAACAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAGTTGGTATCAAACATGCCAGTCATCCATCTCACACCCTTCTCTCCACCAAGGAAGAAGCTTCGGTTTCCTCAACACCCAGATTTTCCACTTGATGTTCAATTTCCAATACCAACGTTTTCAGGCAACCCCCTTGGGCCTAACAGCCCCTTGTGTTGTGTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGAATATCATTTTCAGATCTCCATCTTAACAATAAACTGCAGTTGGGTGTGCTTCCAGCTAACATCCATAAGCTTGATTTGAATACTGGGATTTCTAATGGCAACATAACCAACCATGATAAGAGCAAAGAAAGCTTATCATGCTTGCTGACCATGGGAAATTCTCACAAGAGTTTGGAGAAATCTGATAATGTGAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAAGAGCTTCCAGTGATGTATTGTCTCAGAATTGTACCGGGAAAAATTCACCAGATGAGAATAAGGACAAAGAAAAGTGGTTTTTTAGTGACTCCCAATCTTCACCTCCACAGCAGTTTTCACCAGGAAAGTCCTCTACCACTGAGTTTTCTTGGCAGCTTGGATTGGAAACCGGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTAGGAAGGACCCTAGACCTGTCACGTCTTGGTTCTTATGAAGAACTTTACAGGAGACTGGCCAACATGTTTGGAATAGAAAGGTCTGACATGTTGAGTCATGTACTCTACCGTGATGCAACAGGTGCTGTTAAACAAACTGGAGAAGAACCCTTTAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGCTTCAGGCGGCAAAGATACAAGAAGGGTGTGGATTACAGGAAGTCGAAATGCTGAACATGGATTAGATGCATCAAATAAGACAGGTGTTCTGAGCATATTTGCTTAA 2145 0.4625 MKEAEKSLDPQLWHACAGSMVQMPPVNTKVFYFPQGHAEHAQANVDFGASMRIPPLILCRVATVKFLADPETDEVFARMRLVPLRNSELDYEDGGALDGDPSESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIVGGSEAPSGWSSGSGSCGLGPYGAFCVFLREENKPLRNGCGNSSPGGGGGGGGGGNLSGRTKVTHESVREAMTLAASNQPFEVVYYPRASTPEFCIKTSAVRAAMRIQWGSGMRFKMPFETEDSSRISWFMGTISSVQVVDPIRWPNSPWRLLQVTWDEPDLLNNVKRVSPWLVELVSNMPVIHLTPFSPPRKKLRFPQHPDFPLDVQFPIPTFSGNPLGPNSPLCCVSDNAPAGIQGARHAQFGISFSDLHLNNKLQLGVLPANIHKLDLNTGISNGNITNHDKSKESLSCLLTMGNSHKSLEKSDNVKRHQFLLFGQPILTEQQISRRASSDVLSQNCTGKNSPDENKDKEKWFFSDSQSSPPQQFSPGKSSTTEFSWQLGLETGHCKVFMESEDVGRTLDLSRLGSYEELYRRLANMFGIERSDMLSHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILTASGGKDTRRVWITGSRNAEHGLDASNKTGVLSIFA 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3635g00050 714 FunFam Auxin response factor 325 398 - -
Gabi3635g00050 714 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3635g00050 714 Gene3D - 601 685 - -
Gabi3635g00050 714 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Gabi3635g00050 714 MobiDBLite consensus disorder prediction 549 591 - -
Gabi3635g00050 714 Gene3D - 325 397 - -
Gabi3635g00050 714 Gene3D - 109 213 IPR015300 -
Gabi3635g00050 714 MobiDBLite consensus disorder prediction 255 278 - -
Gabi3635g00050 714 ProSiteProfiles PB1 domain profile. 602 682 IPR000270 GO:0005515
Gabi3635g00050 714 SMART B3_2 111 213 IPR003340 GO:0003677
Gabi3635g00050 714 SUPERFAMILY DNA-binding pseudobarrel domain 104 212 IPR015300 -
Gabi3635g00050 714 CDD B3_DNA 110 211 IPR003340 GO:0003677
Gabi3635g00050 714 MobiDBLite consensus disorder prediction 92 118 - -
Gabi3635g00050 714 Pfam Auxin response factor 287 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3635g00050 714 FunFam Auxin response factor 109 213 - -
Gabi3635g00050 714 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Gabi3635g00050 714 MobiDBLite consensus disorder prediction 574 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3635g00050 Gabi-Chr3635 289982 294289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3635g00050 5 684 B3 DNA Binding Superfamily AT4G30080 60.377 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3635g00050 B3 4.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3635g00050 - - qsa:O6P43_028379 1133.63