Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3635g00042 ATGGCTATGGCTGTGGCTCAACACAGAGAAAGCAGCATTGACAAACACCTTGATGCTTCTGGGAAATATGTTCGATACACGGCGGAGCAAGTTGAAGCTCTTGAACGGGTTTACACAGAGTGCCCCAAGCCAAGTTCCTTGAGAAGACAACAACTAATCAGAGAGTGTCCCATTCTGGCAAACATTGAACCCAAGCAAATCAAAGTTTGGTTCCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCACGGCTTCAGACTGTGAACCGGAAACTGACAGCAATGAACAAGTTGTTGATGGAGGAAAATGATCGGTTGCAGAAACAGGTGTCACATTTGGTATGCGAGAATGGTTATATGCGGCAGCAATTGCATACTCCATCAGCAGCAGCAGCAGCAACTACTGATGCAAGTTGTGATTCGGTGGTTACTACTCCTCAGCATAATATGAGAGATGCTAATAACCCTGCTGGATTCCTATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCGCATAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACAAAGATTGTGGAGATCCTTAAAGATCGTCCATCATGGTTTCGGGATTGTCGGAGTCTAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGGACAGTTGAACTTGTTTACACGCAGACATACGCTCCAATGACACTGGCTCCTGCCCGGGATTTCTGGACTCTGAGGTACACTACAAGTTTAGAAAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTGTCTGGTTCTGGTGCTGGGCCTAATGCAGCTGCTGCTGCTCAGTTTGTGAGAGCCGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTGGAGGCATGGAGTGTGCCAGAAGTGCTGCGACCACTTTATGAATCATCAAAAGTGGTAGCTCAGAAAATGACAATTGCGGCACTTCGCTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAAGTGGTATATGGCTTAGGTAGGCAACCTGCTGTTCTGAGAACCTTTAGCCAAAGGTTGAGCAGAGGCTTCAATGATGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTACTGAACTGTGATGGTGCCGAGGATGTTATTATCGCTGTTAATTCAACCAAGAATTTGAGTGGCACTTCTAATTCAGCAAGTTCCCTTACATTCCCTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTACTCCAAAATATCCCTCCTGCAGTTTTAGTTCGTTTTCTGAGGGAGCATCGCTCTGAGTGGGCTGATTTTAATGTTGATGCCTATTCTGCTGCATCACTTAAAGCTGGCTCCTATGCCTATCCAGGAATGAGGCCTATGAGATTCACTGGCAATCAAATAATCATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAGTTATCCGGCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTATTACAGTTAAGTAGTGGAATCGATGAAAATGCTGTGGGAGCTTGTTCTGAGCTCATATTTGCTCCAATTGACGAAATGTTTCCTGATGATGCTCCATTGGTGCCTTCCGGTTTCCGCATTATCCCATTGGATTTAAAACCAGATGCAATGACAACAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAGGCCCAGCAACAAGTCATGCTGGAGGAGATGCTTCATCAAGTTATAACAATCGATCAGTGTTGACAATTGCATTCCAGTTTCCTTTTGACAGCAGTATGCAGGATAATGTTGCGGCCATGGCACGTCAGTATGTACGTAGTGTGATTTCCTCTGTGCAGACGGTTGCCATGGCTATATCTCCATCTGGTATAAACCTGGCTGTAGGAGCAAAACTATCTCCTGGCTCTCCAGAAGCTCTTACACTAGCTCATTGGATCTGCCAGAGTTACAGTTACCATTTGGGGACGGAACTACTGAGGTCTGATTCTCTTGTCGGTGATTTGGTGCTGAAACATTTGTGGCATCATCAGGATGCCATTTTGTGCTGTTCTTTGAAGTCAATGCCCGTATTCATCTTTGCAAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTTTACAAGACATCACGTTGGATAAAATATTTGATGAGTCTGGACGCAAGGCATTGTCTGCAGATTTTGCCAAGTTAATGCAGCAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCCACAATGGGGCGGCATGTTTCATATGAGCAAGCCATTGCATGGAAAGTGCTTGCTGAAGAAGATAACAATGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCGTTTGTATGA 2520 0.454 MAMAVAQHRESSIDKHLDASGKYVRYTAEQVEALERVYTECPKPSSLRRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVCENGYMRQQLHTPSAAAAATTDASCDSVVTTPQHNMRDANNPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPTKIVEILKDRPSWFRDCRSLEVFTMFPAGNGGTVELVYTQTYAPMTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGAGPNAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIIAVNSTKNLSGTSNSASSLTFPGGILCAKASMLLQNIPPAVLVRFLREHRSEWADFNVDAYSAASLKAGSYAYPGMRPMRFTGNQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQLSSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDLKPDAMTTNRTLDLTSGLEVGPATSHAGGDASSSYNNRSVLTIAFQFPFDSSMQDNVAAMARQYVRSVISSVQTVAMAISPSGINLAVGAKLSPGSPEALTLAHWICQSYSYHLGTELLRSDSLVGDLVLKHLWHHQDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALSADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLAEEDNNVHCLAFSFINWSFV 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3635g00042 839 FunFam Homeobox-leucine zipper protein REVOLUTA 22 77 - -
Gabi3635g00042 839 SUPERFAMILY Bet v1-like 163 375 - -
Gabi3635g00042 839 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Gabi3635g00042 839 CDD START_ArGLABRA2_like 158 374 - -
Gabi3635g00042 839 SMART START_1 163 373 IPR002913 GO:0008289
Gabi3635g00042 839 SMART HOX_1 19 85 IPR001356 GO:0003677
Gabi3635g00042 839 Gene3D - 15 88 - -
Gabi3635g00042 839 Coils Coil 91 118 - -
Gabi3635g00042 839 CDD homeodomain 22 82 IPR001356 GO:0003677
Gabi3635g00042 839 Pfam MEKHLA domain 695 838 IPR013978 -
Gabi3635g00042 839 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Gabi3635g00042 839 Pfam START domain 164 371 IPR002913 GO:0008289
Gabi3635g00042 839 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Gabi3635g00042 839 CDD bZIP 74 113 - -
Gabi3635g00042 839 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Gabi3635g00042 839 Gene3D - 198 380 IPR023393 -
Gabi3635g00042 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 839 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3635g00042 Gabi-Chr3635 247218 255566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3635g00042 1 839 Homeobox Transcription Factor Family AT5G60690 82.139 0.0 1446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3635g00042 START 2.1e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3635g00042 K09338 - gmx:100804870 1523.06