Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3635g00039 ATGGCTATGGCTGTGGCTCAACACAGAGAAAGCAGCATTGACAAACACCTTGATGCTTCTGGGAAATATGTTCGATACACGGCGGAGCAAGTTGAAGCTCTTGAACGGGTTTACACAGAGTGCCCCAAGCCAAGTTCCTTGAGAAGACAACAACTAATCAGAGAGTGTCCCATTCTGGCAAACATTGAACCCAAGCAAATCAAAGTTTGGTTCCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCACGGCTTCAGACTGTGAACCGGAAACTGACAGCAATGAACAAGTTGTTGATGGAGGAAAATGATCGGTTGCAGAAACAGGTGTCACATTTGGTATGCGAGAATGGTTATATGCGGCAGCAATTGCATACTGTAACAGCAGCAACTACTGATGCAAGTTGTGATTCGGTGGTTACTACTCCTCAGCATAATATGAGAGATGCTAATAACCCTGCTGGATTCCTATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCGCATAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACAAAGATTGTGGAGATCCTTAAAGATCGTCCATCATGGTTTCGGGATTGTCGGAGTCTAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGGACAGTTGAACTTGTTTACACGCAGACATACGCTCCAATGACACTGGCTCCTGCCCGGGATTTCTGGACTCTGAGGTACACTACAAGTTTAGAAAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTGTCTGGTTCTGGTGCTGGGCCTAATGCAGCTGCTGCTGCTCAGTTTGTGAGAGCCGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTGGAGGCATGGAGTGTGCCAGAAGTGCTGCGACCACTTTATGAATCATCAAAAGTGGTAGCTCAGAAAATGACAATTGCGGCACTTCGCTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAAGTGGTATATGGCTTAGGTAGGCAACCTGCTGTTCTGAGAACCTTTAGCCAAAGGTTGAGCAGAGGCTTCAATGATGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTACTGAACTGTGATGGTGCCGAGGATGTTATTATCGCTGTTAATTCAACCAAGAATTTGAGTGGCACTTCTAATTCAGCAAGTTCCCTTACATTCCCTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTACTCCAAAATATCCCTCCTGCAGTTTTAGTTCGTTTTCTGAGGGAGCATCGCTCTGAGTGGGCTGATTTTAATGTTGATGCCTATTCTGCTGCATCACTTAAAGCTGGCTCCTATGCCTATCCAGGAATGAGGCCTATGAGATTCACTGGCAATCAAATAATCATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAGTTATCCGGCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTATTACAGTTAAGTAGTGGAATCGATGAAAATGCTGTGGGAGCTTGTTCTGAGCTCATATTTGCTCCAATTGACGAAATGTTTCCTGATGATGCTCCATTGGTGCCTTCCGGTTTCCGCATTATCCCATTGGATTTAAAACCAGGTGATAAAAAGGATGCAATGACAACAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAGGCCCAGCAACAAGTCATGCTGGAGGAGATGCTTCATCAAGTTATAACAATCGATCAGTGTTGACAATTGCATTCCAGTTTCCTTTTGACAGCAGTATGCAGGATAATGTTGCGGCCATGGCACGTCAGTATGTACGTAGTGTGATTTCCTCTGTGCAGACGGTTGCCATGGCTATATCTCCATCTGGTATAAACCTGGCTGTAGGAGCAAAACTATCTCCTGGCTCTCCAGAAGCTCTTACACTAGCTCATTGGATCTGCCAGAGTTACAGTTACCATTTGGGGACGGAACTACTGAGGTCTGATTCTCTTGTCGGTGATTTGGTGCTGAAACATTTGTGGCATCATCAGGATGCCATTTTGTGCTGTTCTTTGAAGTCAATGCCCGTATTCATCTTTGCAAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTTTACAAGACATCACGTTGGATAAAATATTTGATGAGTCTGGACGCAAGGCATTGTCTGCAGATTTTGCCAAGTTAATGCAGCAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCCACAATGGGGCGGCATGTTTCATATGAGCAAGCCATTGCATGGAAAGTGCTTGCTGAAGAAGATAACAATGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCGTTTGTATGA 2523 0.4522 MAMAVAQHRESSIDKHLDASGKYVRYTAEQVEALERVYTECPKPSSLRRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVCENGYMRQQLHTVTAATTDASCDSVVTTPQHNMRDANNPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPTKIVEILKDRPSWFRDCRSLEVFTMFPAGNGGTVELVYTQTYAPMTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGAGPNAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIIAVNSTKNLSGTSNSASSLTFPGGILCAKASMLLQNIPPAVLVRFLREHRSEWADFNVDAYSAASLKAGSYAYPGMRPMRFTGNQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQLSSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDLKPGDKKDAMTTNRTLDLTSGLEVGPATSHAGGDASSSYNNRSVLTIAFQFPFDSSMQDNVAAMARQYVRSVISSVQTVAMAISPSGINLAVGAKLSPGSPEALTLAHWICQSYSYHLGTELLRSDSLVGDLVLKHLWHHQDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALSADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLAEEDNNVHCLAFSFINWSFV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3635g00039 840 Gene3D - 195 377 IPR023393 -
Gabi3635g00039 840 FunFam Homeobox-leucine zipper protein REVOLUTA 22 77 - -
Gabi3635g00039 840 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Gabi3635g00039 840 SMART HOX_1 19 85 IPR001356 GO:0003677
Gabi3635g00039 840 Gene3D - 15 88 - -
Gabi3635g00039 840 Coils Coil 91 118 - -
Gabi3635g00039 840 CDD homeodomain 22 82 IPR001356 GO:0003677
Gabi3635g00039 840 CDD START_ArGLABRA2_like 155 371 - -
Gabi3635g00039 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 840 IPR044830 GO:0003700
Gabi3635g00039 840 SMART START_1 160 370 IPR002913 GO:0008289
Gabi3635g00039 840 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Gabi3635g00039 840 CDD bZIP 74 113 - -
Gabi3635g00039 840 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Gabi3635g00039 840 SUPERFAMILY Bet v1-like 160 372 - -
Gabi3635g00039 840 Pfam MEKHLA domain 696 839 IPR013978 -
Gabi3635g00039 840 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289
Gabi3635g00039 840 Pfam START domain 161 368 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3635g00039 Gabi-Chr3635 247218 255566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3635g00039 1 840 Homeobox Transcription Factor Family AT5G60690 82.783 0.0 1457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3635g00039 START 2.1e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3635g00039 K09338 - gmx:100804870 1538.09