Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3635g00016 ATGAGTGCTGAGGAAAAACATGATGCAGCTTCGTGCAAACGAACCGTTTCTCTTCCAGTTCACATGGTTGATGATCCAATGGGGGTAAGTGGCGAAACCTCACAAGTTCATCATTGTAAGCGACAGAATCTTCTACTGGAAATACCCTCCAGAACATCACAAGAGTCTTCTCAGGATTTTGTTGGAATAAGGATGCCACTGACACCAAGTCCAACCCCAACACATAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAATTAACAATATTCCAGGCCCTTCAGCATCAAGAGGCAAATCATCTATAAGAAATATCTTACCAAAATTGAGCCTCATTGGAGCTCTAGAAGGTTCCTCTTCAGGCCCTCAAGAAAAGTCTTCAATCCCCAGATCAGTGTCCCTGACTAAGATATTTACAAATAAGATTAAGAGAACATCATCATTACCAGTAGAAGAAATTGGGATTGCAAACACAGAATCTGCTCTGGGTGGAAGTGTTGGTGGTTCTCCATATAGAGGAGAGACACAGGCGATGATAGCTCGCACTCGTTCAGAGCCTGTCGATAACAAAGAAAAGAGCATAAGAAGGACAGATTTGTTTTACCGCGTTATTCCTTCCACCCCTCGAGTAAAGGAAGTGAATGAATGCGTGACCACGTCCACAACAATAGATACTGAAAATGATTGTGATGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGCATGGTTGATCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTAAAATGGTTTAGTATCAAGGGTAACAAGACATGTGATGTGTGCAAGAAGGAGGTTCGGAACCTGCCTGTCACTCTCTTACGGATCCAAAATGTTCAAGCTCAGAATACTGGAATTATTGTTACACAGTTGTCTGCTCAATTTATCAGGGTTTGGCAGGAACTGCCAGTACTTGTCATTGTCAACATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTATTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATATCTCTTCCATTTTCCTGTGTACTGGGGCTATTCTCCTCCATGACATCATCAACCATGGTGAGGAGCAGGTTCATCTGGATTTTTGCGTCTGTCCAATTTGCTTTGGTGGTTCTCTTCGCACATATATTTTACTCCTTGGTTCATAAGCAAGCAGTTCTGTCAATCCTTCTAGCTGCATTTGCTGGGTTTGGTGTAGTGCTGAGTGGAAGTTCAGTTCTTGTGGAGCTTTTTAGATGGAGAAGAAGATGGCAGGCTTTATCAGAACAGCAGCATGGTTCTCAGCTGATAACACAAGAAGGACAATACCCTCAAACTGTAATACCGCACGTTTAG 1419 0.4285 MSAEEKHDAASCKRTVSLPVHMVDDPMGVSGETSQVHHCKRQNLLLEIPSRTSQESSQDFVGIRMPLTPSPTPTHKRVNFLVTSRSVDAPINNIPGPSASRGKSSIRNILPKLSLIGALEGSSSGPQEKSSIPRSVSLTKIFTNKIKRTSSLPVEEIGIANTESALGGSVGGSPYRGETQAMIARTRSEPVDNKEKSIRRTDLFYRVIPSTPRVKEVNECVTTSTTIDTENDCDGEDIAEEEAVCRICMVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKKEVRNLPVTLLRIQNVQAQNTGIIVTQLSAQFIRVWQELPVLVIVNMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLFSSMTSSTMVRSRFIWIFASVQFALVVLFAHIFYSLVHKQAVLSILLAAFAGFGVVLSGSSVLVELFRWRRRWQALSEQQHGSQLITQEGQYPQTVIPHV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3635g00016 472 CDD RING_CH-C4HC3_MARCH 245 293 - -
Gabi3635g00016 472 SUPERFAMILY RING/U-box 241 296 - -
Gabi3635g00016 472 Pfam RING-variant domain 245 292 IPR011016 GO:0008270
Gabi3635g00016 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 297 IPR013083 -
Gabi3635g00016 472 SMART ringv_2 244 293 IPR011016 GO:0008270
Gabi3635g00016 472 PANTHER OS02G0165000 PROTEIN 19 459 - -
Gabi3635g00016 472 ProSiteProfiles Zinc finger RING-CH-type profile. 237 299 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3635g00016 Gabi-Chr3635 125085 129826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3635g00016 234 299 C3H Transcription Factor Family AT2G37950 44.776 1.92e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3635g00016 - - gmx:100815566 625.935