Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3635g00015 ATGAGTGCTGAGGAAAAACATGATGCAGCTTCGTGCAAACGAACCGTTTCTCTTCCAGTTCACATGGTTGATGATCCAATGGGGGTAAGTGGCGAAACCTCACAAGTTCATCATTGTAAGCGACAGAATCTTCTACTGGAAATACCCTCCAGAACATCACAAGAGTCTTCTCAGGATTTTGTTGGAATAAGGATGCCACTGACACCAAGTCCAACCCCAACACATAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAATTAACAATATTCCAGGCCCTTCAGCATCAAGAGGCAAATCATCTATAAGAAATATCTTACCAAAATTGAGCCTCATTGGAGCTCTAGAAGGTTCCTCTTCAGGCCCTCAAGAAAAGTCTTCAATCCCCAGATCAGTGTCCCTGACTAAGATATTTACAAATAAGATTAAGAGAACATCATCATTACCAGTAGAAGAAATTGGGATTGCAAACACAGAATCTGCTCTGGGTGGAAGTGTTGGTGGTTCTCCATATAGAGGAGAGACACAGGCGATGATAGCTCGCACTCGTTCAGAGCCTGTCGATAACAAAGAAAAGAGCATAAGAAGGACAGATTTGTTTTACCGCGTTATTCCTTCCACCCCTCGAGTAAAGGAAGTGAATGAATGCGTGACCACGTCCACAACAATAGATACTGAAAATGATTGTGATGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGCATGGTTGATCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTAAAATGGTTTAGTATCAAGGGTAACAAGACATGTGATGTGTGCAAGAAGGAGGTTCGGAACCTGCCTGTCACTCTCTTACGGATCCAAAATGTTCAAGCTCAGAATACTGGAGCAAGGTCTCAGCAGGAAGATGAATATGAATACAGGCAAGTGGTTTGGCAGGAACTGCCAGTACTTGTCATTGTCAACATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTATTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATATCTCTTCCATTTTCCTGTGTACTGGGGCTATTCTCCTCCATGACATCATCAACCATGGTGAGGAGCAGGTTCATCTGGATTTTTGCGTCTGTCCAATTTGCTTTGGTGGTTCTCTTCGCACATATATTTTACTCCTTGGTTCATAAGCAAGCAGTTCTGTCAATCCTTCTAGCTGCATTTGCTGGGTTTGGTGTAGTGCTGAGTGGAAGTTCAGTTCTTGTGGAGCTTTTTAGATGGAGAAGAAGATGGCAGGCTTTATCAGAACAGCAGCATGGTTCTCAGCTGATAACACAAGAAGGACAATACCCTCAAACTGTAATACCGCACGTTTAG 1425 0.4316 MSAEEKHDAASCKRTVSLPVHMVDDPMGVSGETSQVHHCKRQNLLLEIPSRTSQESSQDFVGIRMPLTPSPTPTHKRVNFLVTSRSVDAPINNIPGPSASRGKSSIRNILPKLSLIGALEGSSSGPQEKSSIPRSVSLTKIFTNKIKRTSSLPVEEIGIANTESALGGSVGGSPYRGETQAMIARTRSEPVDNKEKSIRRTDLFYRVIPSTPRVKEVNECVTTSTTIDTENDCDGEDIAEEEAVCRICMVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKKEVRNLPVTLLRIQNVQAQNTGARSQQEDEYEYRQVVWQELPVLVIVNMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLFSSMTSSTMVRSRFIWIFASVQFALVVLFAHIFYSLVHKQAVLSILLAAFAGFGVVLSGSSVLVELFRWRRRWQALSEQQHGSQLITQEGQYPQTVIPHV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3635g00015 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 297 IPR013083 -
Gabi3635g00015 474 CDD RING_CH-C4HC3_MARCH 245 293 - -
Gabi3635g00015 474 SUPERFAMILY RING/U-box 241 296 - -
Gabi3635g00015 474 Pfam RING-variant domain 245 292 IPR011016 GO:0008270
Gabi3635g00015 474 PANTHER OS02G0165000 PROTEIN 19 461 - -
Gabi3635g00015 474 SMART ringv_2 244 293 IPR011016 GO:0008270
Gabi3635g00015 474 ProSiteProfiles Zinc finger RING-CH-type profile. 237 299 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3635g00015 Gabi-Chr3635 125085 129826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3635g00015 234 299 C3H Transcription Factor Family AT2G37950 44.776 1.76e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3635g00015 - - gmx:100815566 629.017