Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3635g00014 ATGAGTGCTGAGGAAAAACATGATGCAGCTTCGTGCAAACGAACCGTTTCTCTTCCAGTTCACATGGTTGATGATCCAATGGGGGTAAGTGGCGAAACCTCACAAGTTCATCATTGTAAGCGACAGAATCTTCTACTGGAAATACCCTCCAGAACATCACAAGAGTCTTCTCAGGATTTTGTTGGAATAAGGATGCCACTGACACCAAGTCCAACCCCAACACATAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAATTAACAATATTCCAGGCCCTTCAGCATCAAGAGGCAAATCATCTATAAGAAATATCTTACCAAAATTGAGCCTCATTGGAGCTCTAGAAGGTTCCTCTTCAGGCCCTCAAGAAAAGTCTTCAATCCCCAGATCAGTGTCCCTGACTAAGATATTTACAAATAAGATTAAGAGAACATCATCATTACCAGTAGAAGAAATTGGGATTGCAAACACAGAATCTGCTCTGGGTGGAAGTGTTGGTGGTTCTCCATATAGAGGAGAGACACAGGCGATGATAGCTCGCACTCGTTCAGAGCCTGTCGATAACAAAGAAAAGAGCATAAGAAGGACAGATTTGTTTTACCGCGTTATTCCTTCCACCCCTCGAGTAAAGGAAGTGAATGAATGCGTGACCACGTCCACAACAATAGATACTGCCTTTCTTGGTTCAGAAAATGATTGTGATGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGCATGGTTGATCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTAAAATGGTTTAGTATCAAGGGTAACAAGACATGTGATGTGTGCAAGAAGGAGGTTCGGAACCTGCCTGTCACTCTCTTACGGATCCAAAATGTTCAAGCTCAGAATACTGGAGCAAGGTCTCAGCAGGAAGATGAATATGAATACAGGGTTTGGCAGGAACTGCCAGTACTTGTCATTGTCAACATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTATTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATATCTCTTCCATTTTCCTGTGTACTGGGGCTATTCTCCTCCATGACATCATCAACCATGGTGAGGAGCAGGTTCATCTGGATTTTTGCGTCTGTCCAATTTGCTTTGGTGGTTCTCTTCGCACATATATTTTACTCCTTGGTTCATAAGCAAGCAGTTCTGTCAATCCTTCTAGCTGCATTTGCTGGGTTTGGTGTAGTGCTGAGTGGAAGTTCAGTTCTTGTGGAGCTTTTTAGATGGAGAAGAAGATGGCAGGCTTTATCAGAACAGCAGCATGGTTCTCAGCTGATAACACAAGAAGGACAATACCCTCAAACTGTAATACCGCACGTTTAG 1434 0.4317 MSAEEKHDAASCKRTVSLPVHMVDDPMGVSGETSQVHHCKRQNLLLEIPSRTSQESSQDFVGIRMPLTPSPTPTHKRVNFLVTSRSVDAPINNIPGPSASRGKSSIRNILPKLSLIGALEGSSSGPQEKSSIPRSVSLTKIFTNKIKRTSSLPVEEIGIANTESALGGSVGGSPYRGETQAMIARTRSEPVDNKEKSIRRTDLFYRVIPSTPRVKEVNECVTTSTTIDTAFLGSENDCDGEDIAEEEAVCRICMVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKKEVRNLPVTLLRIQNVQAQNTGARSQQEDEYEYRVWQELPVLVIVNMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLFSSMTSSTMVRSRFIWIFASVQFALVVLFAHIFYSLVHKQAVLSILLAAFAGFGVVLSGSSVLVELFRWRRRWQALSEQQHGSQLITQEGQYPQTVIPHV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3635g00014 477 ProSiteProfiles Zinc finger RING-CH-type profile. 242 304 IPR011016 GO:0008270
Gabi3635g00014 477 PANTHER OS02G0165000 PROTEIN 19 464 - -
Gabi3635g00014 477 Pfam RING-variant domain 250 297 IPR011016 GO:0008270
Gabi3635g00014 477 SUPERFAMILY RING/U-box 246 301 - -
Gabi3635g00014 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 302 IPR013083 -
Gabi3635g00014 477 CDD RING_CH-C4HC3_MARCH 250 298 - -
Gabi3635g00014 477 SMART ringv_2 249 298 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3635g00014 Gabi-Chr3635 125085 129826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3635g00014 239 304 C3H Transcription Factor Family AT2G37950 44.776 1.79e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3635g00014 - - gmx:100815566 628.632