Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3635g00005 ATGATGTCCGAAGAAACCATTTCTGTTCCTTCCAACCTCAAAGTTGCCATGGTTGAAATTCATGACCCAAACTCAAACCCTAATCCTAACCCTAATTCAAGTTCAGCTAAGAGAAAGAGAAGTTTACCCGGAACACCAGATCCAGATGCAGAAGTGATTGCTCTGTCGCCAAACTCACTGATGGCAACCAATCGTTTCTTATGCGAAGTTTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTTCCATGGAAGCTACGACAAAGAACGAACCAAGACGTGAAGAAGAAGGTTTACGTGTGTCCAGAGAAGAGTTGCGTGCACCATGACCCTTTCAGAGCCTTGGGAGACCTCACAGGTATAAAGAAACACTATAGTAGAAAACATGGTGAGAAGAAGTGGAAGTGCCACAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGCACTAGAGAGTACAAATGTCACTGTGGCACAATATTCTCCAGGAAGGACAGCTTCGTAACGCATAGAGCATTTTGTGAGGCCTTGGTGGAACAAAGTGCGAGAATGACTTCATTACCATCAGTTTTGATAAACGCTCAAACACCAAGAAACCCTCACGGTTTACTTGGGTTAGGCCCTGAAGTACCATTAATGGGGAATTTGCCTCTATGGCTAGACCAAGCCAATCCTCAGCTTCATCATCCTCTTAGCTTTCCAAGCAACACGAGTGCATGCACCTTCCCTGATTTAGTCCAAACAAGTAACATGTTTGGATCATCACCACAGGCACAGTGGCTCATGAATTACCGATACCAAGAAGCATCATCATTTACTAGTGGCAATCTATCTATGCCACAAGGATTGAAGCTAGAACAAGAAGAAAACAAAGGAGACTTGTCACATAGCGTAAGCTCTTTGTACTCAAGTAATATTCAGAACCCACAAGGAGGCCCAATTCACATGTCAGCCACACCATTTTTGCACAAAGCATCCCAAGTGGAATCTACGAGGATCAATAATATTGATCACATAGCCTTCAACAACAACTCTAACAATGTCTTTGGCTTGTTCGGCTCAAATCTCTCAAGCACATCCTGCAGCAACAACCGGAACAACGTTGTTGAAATTCAGAAAATTTTCAAGCAAGCAAATCAGGCTGAAATTTTCAACGATATGGTGAATCAGAATCCCCATGTAAGCACACATAATGGAGGTGGCTTTTCATTAAATGACTCAAACTCGAGCTCGTTTGTGATTGAGAATGGCACCAAGAATGAAGACCAATTGGGCTTAACAAGAGACTTCTTGGGAGTTAGAGATGAATCATTAAGCAGACCCTTCTTACAACAAGAGCTCGCCAAGTTCAATATTCCAATAGGATCATTCATGAACCTGCAAAGCCAGTTCGGTGGACATTATTGA 1455 0.4323 MMSEETISVPSNLKVAMVEIHDPNSNPNPNPNSSSAKRKRSLPGTPDPDAEVIALSPNSLMATNRFLCEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTNQDVKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEKKWKCHKCSKKYAVQSDWKAHSKICGTREYKCHCGTIFSRKDSFVTHRAFCEALVEQSARMTSLPSVLINAQTPRNPHGLLGLGPEVPLMGNLPLWLDQANPQLHHPLSFPSNTSACTFPDLVQTSNMFGSSPQAQWLMNYRYQEASSFTSGNLSMPQGLKLEQEENKGDLSHSVSSLYSSNIQNPQGGPIHMSATPFLHKASQVESTRINNIDHIAFNNNSNNVFGLFGSNLSSTSCSNNRNNVVEIQKIFKQANQAEIFNDMVNQNPHVSTHNGGGFSLNDSNSSSFVIENGTKNEDQLGLTRDFLGVRDESLSRPFLQQELAKFNIPIGSFMNLQSQFGGHY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3635g00005 484 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Gabi3635g00005 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 456 IPR031140 -
Gabi3635g00005 484 MobiDBLite consensus disorder prediction 20 49 - -
Gabi3635g00005 484 FunFam protein indeterminate-domain 12-like 45 113 - -
Gabi3635g00005 484 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Gabi3635g00005 484 Gene3D Classic Zinc Finger 120 200 - -
Gabi3635g00005 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Gabi3635g00005 484 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Gabi3635g00005 484 Gene3D Classic Zinc Finger 46 117 - -
Gabi3635g00005 484 SMART c2h2final6 66 88 IPR013087 -
Gabi3635g00005 484 SMART c2h2final6 142 162 IPR013087 -
Gabi3635g00005 484 SMART c2h2final6 107 137 IPR013087 -
Gabi3635g00005 484 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3635g00005 Gabi-Chr3635 51455 53700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3635g00005 33 471 IDZ Gene Family AT5G03150 46.610 2.61e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3635g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3635g00005 K25870 - gmx:100817691 487.263