Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3634g00054 ATGGACGAAAACTCATCATCATCAATATCCCCACTACCCCAAGAAACCAAACCCACCGCCACCACCGCTACCACCACCACTCCCTTCACAACAACAACTAACCGCAACAAATGCAAAGCCAAAGGTGGCCCTGACAACAACAAATTTAGATACCGCGGTGTGAGGCAACGAAGCTGGGGCAAGTGGGTTGCTGAGATCCGAGAGCCTCGCAAGCGAACACGCAAGTGGCTTGGAACTTTCTCCACCGCCGAGGACGCCGCCAGAGCCTACGACCGCGCCGCCATCATCCTCTATGGTTCTAGGGCTCAGCTCAACCTTCAACCCTCTCCTCCTCCTCCTCCTCCTTCCTCTTCTTCTTCATCTTCTTCACAATCTTCCTCTTCTCGTAACTCTTCCTCTTCTTCACAAACCCTTCGACCACTTCTTCCTCGTCCTTCTGGCTTCGGCTTCACCTTCTCCACCAGTTCTCATGTACCGCTTGTCTTGAACTCCGCCACATACGGTGTTTACCCTGGCGGCGTGTGTAATAATATACCACCGGTGATGTGCCCTAATAATAACAACAACATGCTACATCACAGTACTCACTATCATCATCATCCTCAACAAGTGGTGCAAGTGCAACAAAAGTATCAATCACCAGAATCTGATGGAAGTGTTGCTCATACCGGATCCAACAGAGAAATCACCTCTTATCATCATCATCATGATAATCTTGTAGAGAATAATAATCAGTTGTTAAATGAACACTACCAGAACCAGAATTGCATGTACGAAGATATGAACTCTTTGGTGGGATCAGTAGGGTCAAGCTTGTCTTCTTCGTTAATTTTATCTGCACCGGAGGCTCAGTTAGGTGGTGCGGCGGCGGCAGGACTTGGATCTCCGTCGTCTGTGTGGCCGTTATCAGCTGAGGAGGAATACCCTTCTAGTTTATGGGATTATAATGATCCTTTCTTCTTTGATTTTTAA 972 0.4794 MDENSSSSISPLPQETKPTATTATTTTPFTTTTNRNKCKAKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQPSPPPPPPSSSSSSSSQSSSSRNSSSSSQTLRPLLPRPSGFGFTFSTSSHVPLVLNSATYGVYPGGVCNNIPPVMCPNNNNNMLHHSTHYHHHPQQVVQVQQKYQSPESDGSVAHTGSNREITSYHHHHDNLVENNNQLLNEHYQNQNCMYEDMNSLVGSVGSSLSSSLILSAPEAQLGGAAAAGLGSPSSVWPLSAEEEYPSSLWDYNDPFFFDF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3634g00054 323 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Gabi3634g00054 323 FunFam Ethylene-responsive transcription factor 2 50 108 - -
Gabi3634g00054 323 MobiDBLite consensus disorder prediction 1 52 - -
Gabi3634g00054 323 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Gabi3634g00054 323 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Gabi3634g00054 323 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 22 276 - -
Gabi3634g00054 323 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Gabi3634g00054 323 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Gabi3634g00054 323 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Gabi3634g00054 323 CDD AP2 50 107 IPR001471 GO:0003700|GO:0006355
Gabi3634g00054 323 MobiDBLite consensus disorder prediction 104 140 - -
Gabi3634g00054 323 MobiDBLite consensus disorder prediction 119 140 - -
Gabi3634g00054 323 MobiDBLite consensus disorder prediction 1 40 - -
Gabi3634g00054 323 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3634g00054 Gabi-Chr3634 458545 459516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3634g00054 35 323 AP2-EREBP Transcription Factor Family AT2G40220 47.649 2.84e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3634g00054 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3634g00054 K09286 - gmx:100301892 215.312