Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3634g00053 ATGTCGAGCCAAGATTCCCGGTCATTGAACTGGCACTACACAGAACTCGATGACAGAGACCTCGAGATTCGAGGGAGGACCCTGTTCTTCATCGTCGTGCTCTTCTCCGTTATCCTTCTCATCACCGTTCTCTTCCTCTACACTCGCTGGGTCTGCCGCTACCACGGCCACCTACCCTCCACCGCGTTATCTCCCCACGCGCCGCCGCCTCCGCCGCCGCAGGGGCTTGACCCCGCCTCGATAAAGAAGCTGCCCATTATCTTGCACCAGGAGCTGTCGGACCCCAACGGCGGCGCGTTGGACGAGACGGAGTGCTGTATCTGCCTTGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTGCCGGCGTGTAACCACTGTTTCCATTGCGAGTGTGTTGATAAGTGGCTCACTCATCACTCTAGTTGCCCACTTTGCAGAGCTTCTTTAAAGGTTGAATCTTCCTTCCCAAACATTTTGATTCAGGAACCACCCATTAGAATTAACATCCAGTTTTAG 519 0.5434 MSSQDSRSLNWHYTELDDRDLEIRGRTLFFIVVLFSVILLITVLFLYTRWVCRYHGHLPSTALSPHAPPPPPPQGLDPASIKKLPIILHQELSDPNGGALDETECCICLGEFRDGEKVKVLPACNHCFHCECVDKWLTHHSSCPLCRASLKVESSFPNILIQEPPIRINIQF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3634g00053 172 CDD RING-H2_EL5-like 104 147 - -
Gabi3634g00053 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 153 IPR013083 -
Gabi3634g00053 172 Pfam Ring finger domain 104 147 IPR001841 -
Gabi3634g00053 172 SMART ring_2 105 146 IPR001841 -
Gabi3634g00053 172 SUPERFAMILY RING/U-box 89 153 - -
Gabi3634g00053 172 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 150 IPR044675 -
Gabi3634g00053 172 FunFam RING-H2 finger protein ATL66 68 152 - -
Gabi3634g00053 172 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3634g00053 Gabi-Chr3634 446827 447996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3634g00053 2 155 C3H Transcription Factor Family AT3G11110 45.912 3.11e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3634g00053 - - gmx:100794927 285.034