Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3634g00052 ATGGTTTCCATTGTGACTATGGAAAATTACTATGATTCTGGCTTGCATCTGGGTACCAACTTGGCTCAATGCAGTGATCATTCTCCTTATTCAATCCCTACACAAATACTGCCTCATGTGTCTGACTTTTCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCAGTAACCTTTGAAGGGGCTCCAGAAGAGAGAGCAGCAAGTGCTTCTAAGAGTCACAGTCTAGCAGAGAAAAGGCGTAGAGACAGGATCAATGCACAGCTTGCAACTCTAAGAAAACTGATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGGTAGACCGTGTCAAAGATCTAAAGCGAAAAGCAATGGATGTTAGCAAAGCCTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTATGACACTATTCAAGATGAAAGTTGCACTAAAGTCAACAAGTTCAAGGACAATATAATCATCAAAGCTTCTGTTTGCTGTGATGATCGACCAGAACTATTCTCTGAACTAATCCAAGTCCTCAAAGGCTTGAGACTCACAGCAGTTAAAGCTGACATATCAAGTGTTGGTGGCAGAATTAAAAGTATATTGATACTTTGTTCTAAGGATAGTGAAGAGGGTGTTTGCCTTAGCACTCTCAAACAGTCCCTTAATTCAGCTGTGACCAAAATTGCTTCACCATCCATGACATCTAATTTTCCCACTAGAAGTAAGAGGCAAAGGTTCTTCTTGCCTTCTCATTTCGTACAGTAA 774 0.4096 MVSIVTMENYYDSGLHLGTNLAQCSDHSPYSIPTQILPHVSDFSSLQFGEFHSWPVTFEGAPEERAASASKSHSLAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDRVKDLKRKAMDVSKAFTVPTEIDEVSIDYDTIQDESCTKVNKFKDNIIIKASVCCDDRPELFSELIQVLKGLRLTAVKADISSVGGRIKSILILCSKDSEEGVCLSTLKQSLNSAVTKIASPSMTSNFPTRSKRQRFFLPSHFVQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3634g00052 257 CDD ACT_UUR-ACR-like 164 199 - -
Gabi3634g00052 257 ProSitePatterns Ribosomal protein S2 signature 1. 7 18 IPR018130 GO:0003735|GO:0005840|GO:0006412
Gabi3634g00052 257 Gene3D - 62 126 IPR036638 GO:0046983
Gabi3634g00052 257 Pfam Helix-loop-helix DNA-binding domain 71 117 IPR011598 GO:0046983
Gabi3634g00052 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Gabi3634g00052 257 PANTHER TRANSCRIPTION FACTOR BHLH30 58 252 IPR045847 GO:0003700|GO:0006355
Gabi3634g00052 257 SMART finulus 74 123 IPR011598 GO:0046983
Gabi3634g00052 257 CDD bHLH_AtAIG1_like 63 142 - -
Gabi3634g00052 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 120 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3634g00052 Gabi-Chr3634 432070 433417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3634g00052 7 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.985 1.77e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3634g00052 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3634g00052 - - gmx:100799687 417.927