Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3634g00038 ATGACCTCATCGAACCACCAACAGCCACCGTCACTCTCCGACTCCGACTCTGATTCCGACGGCGGCGCCTCCACCAGCGACCTCCTCCGCCACTCCGAATCCATATTCAAATCCTACTTCGATAATTCCGGCCAATCCTCCTCCGCCGCCGACCTCTCCAAGATTCAATCGTTCCTCAACTCCACCTCCTCCGGCGCTCTATCATGCATGATATGCCTCGAGCGCATCAAACCCTCTGATCCCACGTGGTCCTGCACCTCCCTCTGCTTCGCCGTCTTCCACCTCATCTGCATCCAAAGCTGGGCGCGACAAGCCTCCGATCTCGCCGCCGCGCGTGCCGCCACGCGCCTCCCCATTTCCTCCGACAAGGCCTCCGAAGCCGCCGTCTGGAACTGCCCGAAATGCAGGGTCGAATACCCGAAGAATCACATTCCCAAAACGTACCTCTGCTTCTGTGGGAAATCGGAGAACCCTCCGAGTGATGATCCATGGGTTTTGCCACATTCATGTGGCGAAGTTTGTGGGAGGCCATTGAAGCACAATTGCGGGCACCATTGTTTGCTTCTCTGCCATCCCGGGCCCTGCCCGTCCTGCCCGAAACTCGTTAAAGTTCGTTGCTTTTGTGGGTCCCTTGAAGATGTTAGAAGATGCGGGTTCAAGGAATTCTCTTGCAACAAAACTTGTTCCAAGTTGTTGGATTGCGGTGTTCACAAGTGCGTTGAGATTTGCCACAATGGTCCTTGCCCTGCTTGCATGACACGTGGCGTGTACAGGTGCAGGTGCGGGAAGGTGAAGGAAGAGAGAGAGTGCTGTGATGGTGTTTTCTGTTGTGGTGAACCGTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTGAGAGAGGGTGTCATTATGGTGAGTGTGGTGAGTGTCCCCTTATGGGGAAGAGAACTTGCCCTTGTGGGAATAAGGTGTATGAAGGAATGCCTTGTGATGCTACTTTGCAGGTTTGTGGAGCTACTTGTGATAAAATGTTGAGCTGTGGATATCACAGGTGCCATGAGCGATGCCACCGTGGGAAATGTATTGAGAATTGTAGGATTGTTGTGAGGAAGTCCTGTCGCTGTGGGAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCATGTGAAAGGAAGTGTCAGAGGATGCGTGACTGTGGTCGGCATGCGTGTAAACGTCGCTGCTGTGATGGGGATTGCCCTCCATGCTCAGAGATATGTGGCAGGAAGCTTCGTTGTAAGAATCATAAATGCCCTTCTCCATGTCATAGAGGTGCCTGTGCTCCTTGTCCAATAATGGTGACAATTTCGTGTGCATGTGGGGCGACACATTTTGAGGTTCCTTGTGGTACCGAAATGGATCAAAAGCCACCTAAATGTCCCAAACCATGTCCAATTACTCCTTTATGTCGGCATGCATTAAACTGCAAGCCACACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGGCTACCTTGTGCAGAAGAATTCCCATGTGGCCATACATGCAAATTAAGGTGTCATGGTGCTAAACCTCCTCCTAATCCAGAGTTTACTCTCAGACCAAAGAAAAAGAAGATAATACAACAAAGTGAAAGTGTTTCTGGCACTCCATGCCCTCGTTGCCCAGAACTTGTGTGGAGATCATGTGTCGGGCAACACATTGGAGCAGATAGAATGATGGTCTGCTCTAATGAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTACCATGCGGAAATCATTATTGTACTAAAACTTGTCATCCCTTTGAGGACCAGACTTATGTGAACCAACTAAAGAGGAGCGAGCCTTGTGAAAATTGTTCTCTTCCTTGCCAAAAGGAAAGAGAGCCTGTATGTCCACATCACTGCCCTCGGCGATGCCATCCCGGAGACTGTCCCCCATGCAAGGTGCTCATTAAACGGTCATGTCACTGTGGCGCAATGGTCCATGCTTTTGAGTGCATATATTACAACAGCTTGTCTGCAAAGGGTCAAGAGACTGCTCGTTCATGTGGTGGACCATGTCATAGAAAGTTGCCAAATTGTACACATCTATGCCCAGAGATATGTCATCCCGGACAATGTCCAAATCCTGAGAAATGCTGTAAAAAGGTTACTGTTCGTTGCAAATGTCAAACATTAAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCGTATCATCGTGCTGGTTGCCATCCAAGGGATATACTAAAAAATCAATTTGGAATCGGACTTATTCCTTGCGATTCAGTTTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTGCGTAAATCTAAAGTATCAGAGGTAAAAGAGCCAGATAATGAAAAACCAGTTCCAAAGCGACGAAAAAGGCGGGAACGGGTACTAGAATCCAAGGAAACATCAAAACTACAGAAAATCTTTTCCAGAACAAAGCAACTTCTTCTATTTGTCTTTATTTTTGTCATACTTCTTGCTGCTACATATTATGGGTACAAGGGACTTCTACGGCTCTCTGAATGGATGAACGAGGTTGATGAACGAAGACAAAGATATTCTCGAATCAAATGA 2601 0.4787 MTSSNHQQPPSLSDSDSDSDGGASTSDLLRHSESIFKSYFDNSGQSSSAADLSKIQSFLNSTSSGALSCMICLERIKPSDPTWSCTSLCFAVFHLICIQSWARQASDLAAARAATRLPISSDKASEAAVWNCPKCRVEYPKNHIPKTYLCFCGKSENPPSDDPWVLPHSCGEVCGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGSLEDVRRCGFKEFSCNKTCSKLLDCGVHKCVEICHNGPCPACMTRGVYRCRCGKVKEERECCDGVFCCGEPCEKKLSCGKHVCERGCHYGECGECPLMGKRTCPCGNKVYEGMPCDATLQVCGATCDKMLSCGYHRCHERCHRGKCIENCRIVVRKSCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRKLRCKNHKCPSPCHRGACAPCPIMVTISCACGATHFEVPCGTEMDQKPPKCPKPCPITPLCRHALNCKPHKCHYGACPPCRLPCAEEFPCGHTCKLRCHGAKPPPNPEFTLRPKKKKIIQQSESVSGTPCPRCPELVWRSCVGQHIGADRMMVCSNESQFSCENLCGNPLPCGNHYCTKTCHPFEDQTYVNQLKRSEPCENCSLPCQKEREPVCPHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNSLSAKGQETARSCGGPCHRKLPNCTHLCPEICHPGQCPNPEKCCKKVTVRCKCQTLKKEWLCQDVQAAYHRAGCHPRDILKNQFGIGLIPCDSVCKSKVQVVESELQLRKSKVSEVKEPDNEKPVPKRRKRRERVLESKETSKLQKIFSRTKQLLLFVFIFVILLAATYYGYKGLLRLSEWMNEVDERRQRYSRIK 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 507 516 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 341 359 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 633 648 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 415 439 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 287 305 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 182 199 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 589 600 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 234 251 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 488 498 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 Pfam NF-X1 type zinc finger 394 412 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 CDD NF-X1-zinc-finger 384 432 - -
Gabi3634g00038 866 CDD NF-X1-zinc-finger 277 324 - -
Gabi3634g00038 866 CDD NF-X1-zinc-finger 619 660 - -
Gabi3634g00038 866 CDD NF-X1-zinc-finger 411 459 - -
Gabi3634g00038 866 CDD NF-X1-zinc-finger 224 272 - -
Gabi3634g00038 866 SUPERFAMILY RING/U-box 66 147 - -
Gabi3634g00038 866 MobiDBLite consensus disorder prediction 1 26 - -
Gabi3634g00038 866 MobiDBLite consensus disorder prediction 783 804 - -
Gabi3634g00038 866 SMART znfxneu3 341 361 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 589 621 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 507 552 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 234 253 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 631 649 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 421 440 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 484 499 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 182 200 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 694 716 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 287 306 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 SMART znfxneu3 394 413 IPR000967 GO:0005634|GO:0008270
Gabi3634g00038 866 CDD NF-X1-zinc-finger 170 218 - -
Gabi3634g00038 866 CDD RING-CH-C4HC3_NFXL1 67 136 - -
Gabi3634g00038 866 CDD NF-X1-zinc-finger 331 380 - -
Gabi3634g00038 866 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 38 503 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3634g00038 Gabi-Chr3634 291756 299738 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Gabi3634g00038 zf-NF-X1 0.005 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3634g00038 K15683 - gmx:100799540 1536.55