Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3634g00003 ATGCCACGCAAAGACTACAAGGAGCCACCACCGGCTCCACTCTTCGAACCCTCCGAGCTCACATCTTGGTCTTTCTACAGAGCAGGCATAGCAGAGTTTGTCGCCACTTTTCTGTTTCTCTACATCACCATCTTAACTGTCATGGGTGTCAACAAAGCTGACTCCAAATGCAAATCTGTTGGTATTCAAGGAATCGCTTGGGCTTTTGGCGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCTGGGGGTCATATAAACCCGGCTGTGACATTTGGCTTGTTCTTGGCGAGGAAATTGTCATTGACTAGGGCGGTGTTCTACATGGTGATGCAGGTGCTTGGTGCTATCTGTGGAGCTGGTGTGGTCAAAGGTTTCGAGGGGAAAGCCATGTACGGAAAGTACAATGGTGGTGCCAATTTTGTTAACAAAGGTTATACTAAAGGTGATGGACTTGGTGCTGAAATTGTTGGTACATTTATTCTTGTCTACACCGTCTTCTCTGCCACTGATGCAAAGCGTAACGCCAGAGACTCTCACGTCCCTCTTTTGGCACCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACATGGCCACCATCCCAATCACTGGAACCGGTATCAACCCTGCTCGTAGTCTCGGTGCTGCCATCGTTTTCAACAAAGACCTTGGCTGGGATGATCATTGGATTTTCTGGGTGGGTCCTTTCATTGGAGCAGCTCTTGCGGCTCTTTACCATCAAGTCGTAATCAGAGCCATTCCCTTCAAATCCAAGTGA 786 0.4898 MPRKDYKEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNKADSKCKSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQVLGAICGAGVVKGFEGKAMYGKYNGGANFVNKGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPLLAPLPIGFAVFLVHMATIPITGTGINPARSLGAAIVFNKDLGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3634g00003 261 ProSitePatterns MIP family signature. 87 95 IPR022357 -
Gabi3634g00003 261 Pfam Major intrinsic protein 19 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3634g00003 261 FunFam Probable aquaporin PIP1-2 12 261 - -
Gabi3634g00003 261 CDD MIP 27 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3634g00003 261 NCBIfam MIP family channel protein 31 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3634g00003 261 SUPERFAMILY Aquaporin-like 19 254 IPR023271 -
Gabi3634g00003 261 Gene3D Glycerol uptake facilitator protein. 12 260 IPR023271 -
Gabi3634g00003 261 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 257 IPR034294 -
Gabi3634g00003 261 PRINTS Major intrinsic protein family signature 232 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3634g00003 261 PRINTS Major intrinsic protein family signature 27 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3634g00003 261 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3634g00003 261 PRINTS Major intrinsic protein family signature 156 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3634g00003 261 PRINTS Major intrinsic protein family signature 106 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3634g00003 261 PRINTS Major intrinsic protein family signature 69 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3634g00003 Gabi-Chr3634 18018 23075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3634g00003 4 261 Major Intrinsic Protein MIP AT4G23400 85.659 1.53e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3634g00003 K09872 - gmx:100791447 491.886