Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00045 ATGGAGCTTCACAGGCGCCAAGATCAGAGCCTCTCCGAGAGGAAGGGGCAAAAGCGGAAGCTCGAGGATGAACTGCAGATCTCGGTGGCTCCGCCCACCGCCGACGACTGGAAGGCACTCCTCGCCGAAGTCTCCGAACAGGTGAGCGTCCTTGAGTCGACTTTCACGTGGAACGAAGCCGATCGAGCAGCGGCTAAGCGGGCCACCCACGCGCTTGCCGATCTCGCCAAGAATGAGGAAGTGGTGAACGTGATTGTTGATGGAGGCGCGATTCCGGCTTTGGTTAAACACCTTCAGGCGCCACCTCTGAATGATACTGTTCAGAAGCCATTGCCATTTGAGCACGAGGTTGAGAAAGGGAGTGCTTTCGCACTAGGACTTCTTGCCGTCAAGCAAGAACATCAACAGCTCATTGTTGACAGTGGTGCCCTAACACATCTTGTTGATCTTTTAAAGAGGCATAAGAATGGCTTAACTTCTCGCGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACTCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTCCCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTACGAACCCTGGCTTTTAAAAACGATGAAAATAAAAATCAGATTGTTGAGTGCAATGCTCTTCGGACTCTGATTCTAATGCTACGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGATTACTTAGCTCATGCTGCTCTGAAAGCCAGAGGGAAGCTGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTAATAGAGATGCTTCAGTCTCCTGATGTGCAACTCAGAGAAATGTCTGCCTTTGCGTTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGAGGCTTGGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCGTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTAGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAAGATGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACGTTGAAAAGATTAGAGGAGAAGATTCACGGCCGTGTGCTGAATCATTTGTTATATCTTATGCGCGTTTCAGAAAAGGGTTTTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGTTCTGCAGATGATCAGAGAAGAATTTTTATTGATCATCATGGTCTTGATTTGCTCATTGGGCTTTTTGGCTCGTCTAGCTCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAATTGGCCAATAAAGCCTCGACCCTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTTAGGGGAGCAGTATGTAAACAGTGCTACATTGTCCGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGGATTTGTCTACTTGCATCTTCAGATGCATTTCGCGCAATGTTCGATGGTGGTTATAGGGAGAAGGATGCCAGGGACATAGAGATTCCAAATATTAAATGGGAAGTTTTTGAGCTGATGATGAGATTTATATATACTGGGTCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTGGAGCAGCTGATCAATATCTTTTAGAAGGACTCAAGAGACTCTGA 1872 0.4573 MELHRRQDQSLSERKGQKRKLEDELQISVAPPTADDWKALLAEVSEQVSVLESTFTWNEADRAAAKRATHALADLAKNEEVVNVIVDGGAIPALVKHLQAPPLNDTVQKPLPFEHEVEKGSAFALGLLAVKQEHQQLIVDSGALTHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFPDTKVQRAAAGALRTLAFKNDENKNQIVECNALRTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGFQRRVALALAHLCSADDQRRIFIDHHGLDLLIGLFGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNSATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIKWEVFELMMRFIYTGSVDVTLDIAQDLLGAADQYLLEGLKRL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00045 623 SMART arm_5 307 347 IPR000225 GO:0005515
Gabi3628g00045 623 SMART arm_5 78 130 IPR000225 GO:0005515
Gabi3628g00045 623 SMART arm_5 223 263 IPR000225 GO:0005515
Gabi3628g00045 623 SMART arm_5 463 503 IPR000225 GO:0005515
Gabi3628g00045 623 SMART arm_5 181 221 IPR000225 GO:0005515
Gabi3628g00045 623 SMART arm_5 348 388 IPR000225 GO:0005515
Gabi3628g00045 623 SMART arm_5 265 305 IPR000225 GO:0005515
Gabi3628g00045 623 SMART arm_5 131 179 IPR000225 GO:0005515
Gabi3628g00045 623 Gene3D Potassium Channel Kv1.1; Chain A 515 623 IPR011333 -
Gabi3628g00045 623 ProSiteProfiles BTB domain profile. 535 602 IPR000210 GO:0005515
Gabi3628g00045 623 Gene3D - 38 162 IPR011989 -
Gabi3628g00045 623 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 623 IPR044282 -
Gabi3628g00045 623 Pfam BTB/POZ domain 528 622 IPR000210 GO:0005515
Gabi3628g00045 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 143 IPR000225 GO:0005515
Gabi3628g00045 623 Gene3D - 163 268 IPR011989 -
Gabi3628g00045 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 192 227 IPR000225 GO:0005515
Gabi3628g00045 623 SUPERFAMILY ARM repeat 53 406 IPR016024 -
Gabi3628g00045 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 318 360 IPR000225 GO:0005515
Gabi3628g00045 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 192 IPR000225 GO:0005515
Gabi3628g00045 623 Pfam Armadillo/beta-catenin-like repeat 223 262 IPR000225 GO:0005515
Gabi3628g00045 623 Pfam Armadillo/beta-catenin-like repeat 307 346 IPR000225 GO:0005515
Gabi3628g00045 623 Pfam Armadillo/beta-catenin-like repeat 188 220 IPR000225 GO:0005515
Gabi3628g00045 623 SUPERFAMILY ARM repeat 433 504 IPR016024 -
Gabi3628g00045 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 234 276 IPR000225 GO:0005515
Gabi3628g00045 623 SMART BTB_4 535 623 IPR000210 GO:0005515
Gabi3628g00045 623 MobiDBLite consensus disorder prediction 1 25 - -
Gabi3628g00045 623 Gene3D - 269 511 IPR011989 -
Gabi3628g00045 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Gabi3628g00045 623 SUPERFAMILY POZ domain 527 622 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00045 Gabi-Chr3628 385662 396587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00045 291 405 U-box Gene Family AT3G46510 29.915 4.12e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi3628g00045 BTB 5.5e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00045 - - gmx:100784348 1113.6