Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00044 ATGGAGCTTCACAGGCGCCAAGATCAGAGCCTCTCCGAGAGGAAGGGGCAAAAGCGGAAGCTCGAGGATGAACTGCAGATCTCGGTGGCTCCGCCCACCGCCGACGACTGGAAGGCACTCCTCGCCGAAGTCTCCGAACAGGTGAGCGTCCTTGAGTCGACTTTCACGTGGAACGAAGCCGATCGAGCAGCGGCTAAGCGGGCCACCCACGCGCTTGCCGATCTCGCCAAGAATGAGGAAGTGGTGAACGTGATTGTTGATGGAGGCGCGATTCCGGCTTTGGTTAAACACCTTCAGGCGCCACCTCTGAATGATACTGTTCAGAAGCCATTGCCATTTGAGCACGAGGTTGAGAAAGGGAGTGCTTTCGCACTAGGACTTCTTGCCGTCAAGCAAGAACATCAACAGCTCATTGTTGACAGTGGTGCCCTAACACATCTTGTTGATCTTTTAAAGAGGCATAAGAATGGCTTAACTTCTCGCGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACTCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTCCCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTACGAACCCTGGCTTTTAAAAACGATGAAAATAAAAATCAGATTGTTGAGTGCAATGCTCTTCGGACTCTGATTCTAATGCTACGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGATTACTTAGCTCATGCTGCTCTGAAAGCCAGAGGGAAGCTGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTAATAGAGATGCTTCAGTCTCCTGATGTGCAACTCAGAGAAATGTCTGCCTTTGCGTTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGAGGCTTGGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCGTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTAGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAAGATGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACGTTGAAAAGATTAGAGGAGAAGATTCACGGCCGTGTGCTGAATCATTTGTTATATCTTATGCGCGTTTCAGAAAAGGGTTTTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGTTCTGCAGATGATCAGAGAAGAATTTTTATTGATCATCATGGTCTTGATTTGCTCATTGGGCTTTTTGGCTCGTCTAGCTCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAATTGGCCAATAAAGCCTCGACCCTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTTAGGGGAGCAGTATGTAAACAGTGCTACATTGTCCGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGGATTTGTCTACTTGCATCTTCAGATGCATTTCGCGCAATGTTCGATGGTGGTTATAGGGAGAAGGATGCCAGGGACATAGAGATTCCAAATATTAAATGGGAAGTTTTTGAGCTGATGATGAGATTTATATATACTGGGTCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTGGAGCAGCTGATCAATATCTTTTAGAAGGACTCAAGAGACTCTGTGAGTACACAATTGCGCAGGATATATCACTGGAGAACGTTTCAAGTATGTATGAACTTTCAGAAGCCTTTAATGCGATATCATTGAGGCATGCATGCATTCTTTTTATCTTGGAGCAATTCGATAAATTGAGTGCAAGGCCAGGGCACTCTCTTCTTATTCAACGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAACTCCCATAACAACCGACTGTAG 2109 0.4509 MELHRRQDQSLSERKGQKRKLEDELQISVAPPTADDWKALLAEVSEQVSVLESTFTWNEADRAAAKRATHALADLAKNEEVVNVIVDGGAIPALVKHLQAPPLNDTVQKPLPFEHEVEKGSAFALGLLAVKQEHQQLIVDSGALTHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFPDTKVQRAAAGALRTLAFKNDENKNQIVECNALRTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGFQRRVALALAHLCSADDQRRIFIDHHGLDLLIGLFGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNSATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIKWEVFELMMRFIYTGSVDVTLDIAQDLLGAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHACILFILEQFDKLSARPGHSLLIQRIIPEIRNYFVKALTKANSHNNRL 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00044 702 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 697 IPR044282 -
Gabi3628g00044 702 Gene3D - 163 267 IPR011989 -
Gabi3628g00044 702 Gene3D - 35 162 IPR011989 -
Gabi3628g00044 702 Pfam Armadillo/beta-catenin-like repeat 307 346 IPR000225 GO:0005515
Gabi3628g00044 702 Pfam Armadillo/beta-catenin-like repeat 188 220 IPR000225 GO:0005515
Gabi3628g00044 702 Pfam Armadillo/beta-catenin-like repeat 223 262 IPR000225 GO:0005515
Gabi3628g00044 702 Gene3D Potassium Channel Kv1.1; Chain A 515 661 IPR011333 -
Gabi3628g00044 702 Pfam BTB/POZ domain 528 630 IPR000210 GO:0005515
Gabi3628g00044 702 SUPERFAMILY POZ domain 527 629 IPR011333 -
Gabi3628g00044 702 SMART arm_5 307 347 IPR000225 GO:0005515
Gabi3628g00044 702 SMART arm_5 78 130 IPR000225 GO:0005515
Gabi3628g00044 702 SMART arm_5 223 263 IPR000225 GO:0005515
Gabi3628g00044 702 SMART arm_5 463 503 IPR000225 GO:0005515
Gabi3628g00044 702 SMART arm_5 181 221 IPR000225 GO:0005515
Gabi3628g00044 702 SMART arm_5 348 388 IPR000225 GO:0005515
Gabi3628g00044 702 SMART arm_5 265 305 IPR000225 GO:0005515
Gabi3628g00044 702 SMART arm_5 131 179 IPR000225 GO:0005515
Gabi3628g00044 702 ProSiteProfiles BTB domain profile. 535 602 IPR000210 GO:0005515
Gabi3628g00044 702 SMART BTB_4 535 632 IPR000210 GO:0005515
Gabi3628g00044 702 FunFam Armadillo/beta-catenin repeat family protein 526 670 - -
Gabi3628g00044 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 143 IPR000225 GO:0005515
Gabi3628g00044 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 192 227 IPR000225 GO:0005515
Gabi3628g00044 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 192 IPR000225 GO:0005515
Gabi3628g00044 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 318 360 IPR000225 GO:0005515
Gabi3628g00044 702 SUPERFAMILY ARM repeat 54 406 IPR016024 -
Gabi3628g00044 702 SUPERFAMILY ARM repeat 433 504 IPR016024 -
Gabi3628g00044 702 CDD BTB_POZ_ARIA_plant 522 637 - -
Gabi3628g00044 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 234 276 IPR000225 GO:0005515
Gabi3628g00044 702 MobiDBLite consensus disorder prediction 1 25 - -
Gabi3628g00044 702 Gene3D - 268 513 IPR011989 -
Gabi3628g00044 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00044 Gabi-Chr3628 384177 396587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00044 197 502 U-box Gene Family AT3G46510 25.407 5.06e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi3628g00044 BTB 1.7e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00044 - - gmx:100784348 1258.05