Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00038 ATGGATCAGGAGAATGAGAATGAGAAGGAGAAGGAGAAGGAGATTCACGCGAAGACACTCATCTGTGCTATCAACCTTCTCTCACGCGACCTCCCTCTTCCCTCTCACCTCCTCAACTCCGTCTCTTCCATCTATCACAACCATGGCGATGTAGGGAATCATAGAGAAGATTTAATAGCAGATCTTCAAGATGCATTATTGAAGCAACGTCCAGATTGTGGGTCAGGTTTCAAGCTGGAGGAAGCTAGGAAAAACCGATATCGAAGTCAGATTCAGCATCGGTTAAATGAGCTTGAAGAATTGCCTCCAAGCAGGGGAGAGGACCTGCAGACAAAGTGTCTGCTTGAACTTTATGGACTAAAGCTAGCGGAGTTGCAGTCGAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTTAATATTCAATGTGCATATCCTGACAGGCAATTATTTGATTGGGGCATAATGCGATTGCGCCGTCCACTTTATGGCGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGATGCTGAGAGACTGTCAAGATTAGAAGAGGAGCAGAAAAATCATATAGAGACTAGAAAAAGAAAATTTTTTGCAGAAATACTCAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGGGCAACCCGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTACGCTTCTTGAAGAAACCAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTCCAAACATTCAGTTGGTATTGAACCCTTGGAAGATTCAGAAGCTGATTTACCTGAGTCAGATGCTTCAAAAAATGGAATTTCTAAGGAATCACCTTTTGATGAAGATATAGATGTGATAGATTCTGATCATAATGATGATTCTAGTGACTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAAGTAACTGAGCAACCGTCTATGCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAATGGATGATTTCTTTGTTTAATAATAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACAATTTCGCTGATAGCACATCTTATCGAACACAAGGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGATGAGTGAATTCTCATCATGGGCTCCAAGCATTATAACTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTCTGATTACACACTATGATCTTATAATGAGAGATAAAGCATTTCTTAAGAAAATTCAATGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCACGAGTCTGCTCTGGCAAGAACCTTGGACTCTGGCTATCACATCAAACGCAGACTTCTATTGACCGGTACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATATTCAACTCTGTTCAGAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGGGTTGATGTCTCTCTATCAGATGAAGAACAGCTATTGATCATTCGGCGTCTACATCAAGTAATAAGGCCCTTTATATTAAGAAGGAAAAAGGATGAGGTAGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTAAAATGTGATATGTCAGCCTGGCAGAAAGTGTATTATCATCAAGTTACTGACGTAGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTAACAATGCAACTCAGAAAGTGTTGTAATCATCCCTACCTCTTCGTGGGAGAATATGATATGTATAAACGTAAGGAGGAGATTGTTCGAGCATCAGGTAAATTTGAACTTCTTGACCGTTTGCTTCCCAAACTTCGCAGAGCTGGCCACAGAGTCCTGCTTTTCTCACAAATGACGAGACTCATGGACGTTCTCGAAATTTATTTACGACTTCATGATTATAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCACTCTACTACGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCTCAAATGGATCAACAAGCTGAAGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTGGGTTCAATTGAAGAGGTAATTTTAGATCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGACTTTTCAATACAACTTCAACAGCCCAAGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGGGGTACAAGCTCACTTGGGACAGATGTGCCCAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGAACAGAGGAGGAATTCTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGGCAAAAGGAAAATTACAGATCTCGTCTCATGGAAGAGCATGAATTGCCAGATTGGGTGTACTCTCCACTTAATAAGGATGATAAGGTGAAAGATTTCAATGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAATGGATGAAGGCTGTGGAGAATGGGGAAGACATGTCAAAGCTTCGAGTTAAAAGGAAAAGAAGAGACCACCTCTCATCTGACAGCATTACACAAGCCACTGATAATGCGGTGGTAGAAGAAAGTTTATTAGAGTTGAGAACTGAAAGTGTCCCCATGGAAAATGAGAGAACTAGTGAAGAAGATAGGTTCCATGTGACCCCTGCCTCAAAGAGATTCACGCCTGAAGGAACAAATTCCCAGAAACATGCATACGAGAATGTCAGAGGAAGTGGATTGAACCAGCATGTGTTGTCGTGGAATACTCACAGAAAGAAGAGATCAAGCTATCTTGGCCAGGGTTCATTATCTGATTCTAGAGGGCATGCTTCAAATGGAAGAGCAAACTGGAACTGA 3255 0.416 MDQENENEKEKEKEIHAKTLICAINLLSRDLPLPSHLLNSVSSIYHNHGDVGNHREDLIADLQDALLKQRPDCGSGFKLEEARKNRYRSQIQHRLNELEELPPSRGEDLQTKCLLELYGLKLAELQSKVRSDVSSEYWLNIQCAYPDRQLFDWGIMRLRRPLYGVGDPFAMDADDQLRKKRDAERLSRLEEEQKNHIETRKRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHSVGIEPLEDSEADLPESDASKNGISKESPFDEDIDVIDSDHNDDSSDLLEGQRQYNSAIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLIEHKGVTGPHLIVAPKAVLPNWMSEFSSWAPSIITILYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIQWYYLIVDEGHRLKNHESALARTLDSGYHIKRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYHQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDYKYLRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILDRAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARTEEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPLNKDDKVKDFNGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDMSKLRVKRKRRDHLSSDSITQATDNAVVEESLLELRTESVPMENERTSEEDRFHVTPASKRFTPEGTNSQKHAYENVRGSGLNQHVLSWNTHRKKRSSYLGQGSLSDSRGHASNGRANWN 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00038 1084 Pfam Helicase conserved C-terminal domain 690 803 IPR001650 -
Gabi3628g00038 1084 Pfam SNF2-related domain 382 670 IPR000330 GO:0005524|GO:0140658
Gabi3628g00038 1084 Coils Coil 894 914 - -
Gabi3628g00038 1084 FunFam Chromatin structure-remodeling complex protein SYD 370 613 - -
Gabi3628g00038 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 857 IPR027417 -
Gabi3628g00038 1084 Pfam Snf2-ATP coupling, chromatin remodelling complex 896 956 IPR029295 GO:0042393
Gabi3628g00038 1084 SMART SnAC_2 896 956 IPR029295 GO:0042393
Gabi3628g00038 1084 MobiDBLite consensus disorder prediction 1057 1084 - -
Gabi3628g00038 1084 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 693 860 IPR001650 -
Gabi3628g00038 1084 SMART ultradead3 375 568 IPR014001 -
Gabi3628g00038 1084 Gene3D - 348 603 IPR038718 -
Gabi3628g00038 1084 Gene3D - 610 910 IPR027417 -
Gabi3628g00038 1084 MobiDBLite consensus disorder prediction 296 349 - -
Gabi3628g00038 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 604 IPR027417 -
Gabi3628g00038 1084 FunFam Probable ATP-dependent DNA helicase CHR12 610 909 - -
Gabi3628g00038 1084 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 391 557 IPR014001 -
Gabi3628g00038 1084 PANTHER SNF2/RAD54 HELICASE FAMILY 172 976 - -
Gabi3628g00038 1084 SMART helicmild6 719 803 IPR001650 -
Gabi3628g00038 1084 CDD SF2_C_SNF 679 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00038 Gabi-Chr3628 325447 335502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00038 361 830 RAD5 or RAD16-like Gene Family AT1G02670 27.257 1.82e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3628g00038 SNF2_N 5.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00038 - - gmx:100796912 1919.05