Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00033 ATGCAAGAGTTTTTCGGCTCCGTTCGTCGATCCTTTGTTTTCAGACAAAGGGACGATGGAATCGCCGACAAGATTGGCTCTGCCATTCGAAAATCGCGATTAGGCCTCAAGCCTCTTCCTCCGCCACTTCCCGCCCCTCCCATCCGGTGGCGCAAAGGCGAGTTGATTGGTTCCGGTGCCTTCGGTCGCGTCTACATGGGCATGAACCTTGACTCCGGGGAGCTTATTGCTATCAAACAGGTTTTGATCGCTCCTGGTAGCGCTTCCGACGAGAATACGCAGGCAAATATTCGGGAGCTCGAAGAAGAAGTGAAGCTTCTCAAGAATCTCAAGCATCCAAATATTGTAAGATACTTGGGAATTGCTAGAGAGGAGGATTCCTTAAATATTCTTCTGGAGTTTGTACCTGGTGGATCTATCTCATCACTCTTGGGGAAATTCGGATCCTTCCCCGAGTCCGTTATAAAAATGTATACAAAACAGCTTTTACTGGGCCTTGAATACCTTCATAATAATGGCATTATTCACAGGGATATTAAGGGTGCAAACATTCTAGTTGATAACAAAGGCTGCATCAAACTTGCAGACTTCGGTGCATCCAAGAAAGTTGTTGAACTGGCTATAAATGCTGCGAAGTCAATAAAGGGTACCCCGCATTGGATGTCTCCTGAAGTAATTTTACAGACAGGACATACAATCTCTACTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGAAAGCCTCCGTGGAGTCAACAGTATCCCCACGAGATTTCGGCTCTTTACTACATTGGGACAACTAAATCTCATCCACCCATACCTGAACATCTGTCTGCTGAGGCCAAGGACTTTTTGCTTAAATGCTTCCGGAAGGAACCAAATTTAAGGCCTTCTGCGTCAGACTTGTTACTGCATCCATTCATCACCTGTGAGTATCTGGAATCTCATTCAATGTTACGCAGTTCAATCAGGGACTCTTGCAATCAGATGGCAACATATGGGATGAACTCTAGAAACTTTTTGGATTCTGTCCGGAGATCAACCTGCACGGGCCTTAAGGATGTCTGTCGGATGGATAACTTACGGTTCTCGACTGTATATCATTCAAATTTTCTAAAAGCAGGTTCCTACCAGGGAGCAGACAACTATGATGATGACATGTGTCAGATGGATGATAAAGATGCTTTTTCGGTTGTTTCATCAGTAAAATCTAAATCTCTATTTGCTTCTGATGATATAAAGAGTTTCACTCCTATGTGCGAACCTGTGGATGACTGGCCTTGCAAGTTTGATGAAAATCTAAATTTGGAGAAAAGCATAACGAACTTGTCTCCGGATCAAACTATTGGGAAAATTATGAGAAGTCACGAACCATCTAAGAAGGCGGAGAATGAATTCTCATTTTCAAGTGAGCCTCTAGGAGCTGAAGAGGATGATGAAGTCACAGAGTTCAAAATTAGAGCTTTCCTAGATGATAAGGCCTTCGAACTGAAGAAACTCCAAACACCTCTTTATGAAGAATTCTTTGGCATATCAAATGCAGCCATTGCTCCTGCACCTGTTGCAGTTGCACAGAGTAAAATTGTTTCCGATGTCTCCAATTTAACATCAAAAGGCAGGTCTCCAAGTGAGGCTTGGAGACGAATCTCAATCGCTGGCAGTGCCAATGTTGCAAGCCTTGGGAGTCACAACAAATATCAATCAAAGCTTAGTAGTGCTCACAGTCGACCTTTGCAGGAAATTCAACCATCTGAGCTCAATGAATCAAAGGAGACTCTTCACGATACTGAGCTGGAATCTTTTAGTGTTAGCTCAAGCTTTTCTGAGAGACAAAGGAAATGGAAAGAAGAACTTGTTGAAGAACTTGAATGGAAGCGAGAGATGATGCGCCAGGCAGGATTAGGAGGGAAGATAACATCCCCAAAGGATCCCAATTTTTATGGAGATTGA 1962 0.4363 MQEFFGSVRRSFVFRQRDDGIADKIGSAIRKSRLGLKPLPPPLPAPPIRWRKGELIGSGAFGRVYMGMNLDSGELIAIKQVLIAPGSASDENTQANIRELEEEVKLLKNLKHPNIVRYLGIAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKMYTKQLLLGLEYLHNNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELAINAAKSIKGTPHWMSPEVILQTGHTISTDIWSVACTVIEMATGKPPWSQQYPHEISALYYIGTTKSHPPIPEHLSAEAKDFLLKCFRKEPNLRPSASDLLLHPFITCEYLESHSMLRSSIRDSCNQMATYGMNSRNFLDSVRRSTCTGLKDVCRMDNLRFSTVYHSNFLKAGSYQGADNYDDDMCQMDDKDAFSVVSSVKSKSLFASDDIKSFTPMCEPVDDWPCKFDENLNLEKSITNLSPDQTIGKIMRSHEPSKKAENEFSFSSEPLGAEEDDEVTEFKIRAFLDDKAFELKKLQTPLYEEFFGISNAAIAPAPVAVAQSKIVSDVSNLTSKGRSPSEAWRRISIAGSANVASLGSHNKYQSKLSSAHSRPLQEIQPSELNESKETLHDTELESFSVSSSFSERQRKWKEELVEELEWKREMMRQAGLGGKITSPKDPNFYGD 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00033 653 Pfam Protein kinase domain 51 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00033 653 ProSiteProfiles Protein kinase domain profile. 50 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00033 653 SMART serkin_6 50 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00033 653 Coils Coil 90 110 - -
Gabi3628g00033 653 SUPERFAMILY Protein kinase-like (PK-like) 49 335 IPR011009 -
Gabi3628g00033 653 CDD STKc_MAPKKK 49 312 - -
Gabi3628g00033 653 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 45 323 - -
Gabi3628g00033 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Gabi3628g00033 653 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Gabi3628g00033 653 FunFam Serine/threonine-protein kinase STE11 47 140 - -
Gabi3628g00033 653 Gene3D Transferase(Phosphotransferase) domain 1 49 345 - -
Gabi3628g00033 653 FunFam Mitogen-activated protein kinase kinase kinase 2 49 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00033 Gabi-Chr3628 252080 261376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00033 1 641 MAP Kinase Kinase Kinase AT3G06030 56.024 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi3628g00033 Pkinase 2.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00033 K20606 - gmx:100795863 944.495