Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00029 ATGTACTCTCAAAATCTGATACTTTCCCCAGAAAACCCTAGATCGCTGACGTTTTCTTCAAAACCGATGAGCAATGAGATCGCCATCGCCCAGAAGCCTCCCCCTTCAATTCTCGTTGGCCGGTTCAAGGCTCTCCTCAAGGAAAGGGACGACGACGTTAGGGCCTCCTCCGGTGCCCCCGTGCCGCCGCCCACCACCGACGAAATCGTGCAGATTTACGAGTTGCTCTTGTCGGAACTCACATGCAACTTGAAGCCCATCATCACCGATCTCACCATCATTGCCGAACAGCAGAGGGAGCATGCCAAGGGCATCGCTGATGCAATTTGCAATCGGATTCTTGAGGTGCCTCCAGATCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATTGTGAAGAATTTTGGTCAGGAATATGTTAGATACTTCTCTTTACGTCTGCCTGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGCCATCTCTTTGGCACCTGGTCCAAAGTCTTTCGACCTTCTGTCCTATGCAAGATTGAAGCTCAATTACAATTTTCTCAAGCAGTTAATACTCAATCATCCACCATCAATCCCATCAGGGCATCTGAATCTCCTCGACCAACTCATGGCATACATGTTAATCCAAAGTACTTGCGGCAGTTGGAGCGCTCAACTGTTGATAGTGTTGGTGGTGAAAAGTTGGACTCATCAGGAAATGCTAGTAATACAAGTTTTGGCCTAGCTAGTAAGATGCATCAATTTGTATCCAGCAGTAGTAGGCCTGGAATATCCTCATCACCTTCAAGAATTGGAATTGATATGCCTTCATCTGCATCTATGGATGATTATGCAGTTGACAATTCTGCTGGCAGGATAGTTGAGAGAGAGTCTCCTAATCCTGTTGTTGATTATGGAGTAGCCAAAATATTAGGTAGAGATGAAGAGTTGAGTAAATGGCAGCAAAAGCAGTATTCTGCTGATGGTCGAAATCGATTTCAAACTTCTATGACATACAGCCTTAGTAATGGACATCATCGTCAAAGTCCAAGAGCTCTAATTGATGCATATGGCAGTGACAAAAGACAAGAAACTCCAAGCAGTAAGCCTTTCTTAGTTGAACGGCTGGATAGAAATGGTATAGACAACAAGTTGTTGTCAACATCATGGCAGAATACTGAAGAGAAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGGAATAATGGTTTTTTTCCATCAGCAAATGGTTTCTCCCGGGATAGGCCTGTTATTGTTGCAGCTAATGCAACTTTGGCAGAGGAAGATAATGGAAAGGGTTGGTCTAGTGGACCTCAGCTTCTTCAAGTAGATGATTCCTCTGTTATAGCAGAAGATGCATTTGCCTCTTCGACTTATGGTCGTGTATCCCTGGGTCAGGTATCTGGATTCCAAAATCAAATAAATCATAGTCTTGGCTCCTGTCAACCTCATGATGATTGGAAGATTTCTCATCATCCTTCTAATTCTTCACAACATTTCTTTAATAATAGGGGGCGAGCAAGGAGTCTTCTGATGCCTCCTATTGATAATATTCCCAATACAGATGTAAACCCATATCGGATTCGACCTGCGGTGTCAAGGATGGTTTCTGGTCTACCCTCTAATATGGAGGCTCGTTCACCAGTTTTGCCAGCATCTTTTGAAATAAGGCCTTCTGTAAATGTGCTTGCCACTCATCCTCCCACCTTAAATCCAATATTTCCCTTGCAAAAACATGTTAGGAGTCAGCTCGAAGCTATAAATACTAGTAACCCTATTGTGAATCATGGTCCAAATAAACCCTCGTTTATGCCCGAACAGTCGTTTGACAGTATTGAGAACAAGGATGCAAGTAAAGCAAAGATACATCAGTTGCCTAATCAGTTTGCTGGACTGATTTCGTCCAACCAGAGGAACCGTGGCCAAGCACCACAACTACAGTTTTTTCCATCTCAGGATCCTTCAGCCTCTCAATTTAGTCATGGGAGCTCTTTGCAAGGGCATGGTGCTTCTATAAGTAAAGCTATGTCAAATCCACGACCTGCTATACAATTCTCTTTACCAGGAAGTATTGCAAATAACCCTTTACATTTACAGGGGGGAGCCCTTCCACCTTTACCTTCAGGTCGCCCTCCTGCTCCATCACAGATGATGCCTCATCCAAATGCTAGTCCATTTGTGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATCAATTCACTTATGTCGAAAGGGGTGATCTCATTGGCTAACCAGTCCCCTGTACAGATTTCATCATTTGCTTTTAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGA 2382 0.4358 MYSQNLILSPENPRSLTFSSKPMSNEIAIAQKPPPSILVGRFKALLKERDDDVRASSGAPVPPPTTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICNRILEVPPDQKLPSLYLLDSIVKNFGQEYVRYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFRPSVLCKIEAQLQFSQAVNTQSSTINPIRASESPRPTHGIHVNPKYLRQLERSTVDSVGGEKLDSSGNASNTSFGLASKMHQFVSSSSRPGISSSPSRIGIDMPSSASMDDYAVDNSAGRIVERESPNPVVDYGVAKILGRDEELSKWQQKQYSADGRNRFQTSMTYSLSNGHHRQSPRALIDAYGSDKRQETPSSKPFLVERLDRNGIDNKLLSTSWQNTEEKEFDWEDMSPTLVDHSRNNGFFPSANGFSRDRPVIVAANATLAEEDNGKGWSSGPQLLQVDDSSVIAEDAFASSTYGRVSLGQVSGFQNQINHSLGSCQPHDDWKISHHPSNSSQHFFNNRGRARSLLMPPIDNIPNTDVNPYRIRPAVSRMVSGLPSNMEARSPVLPASFEIRPSVNVLATHPPTLNPIFPLQKHVRSQLEAINTSNPIVNHGPNKPSFMPEQSFDSIENKDASKAKIHQLPNQFAGLISSNQRNRGQAPQLQFFPSQDPSASQFSHGSSLQGHGASISKAMSNPRPAIQFSLPGSIANNPLHLQGGALPPLPSGRPPAPSQMMPHPNASPFVSSQQPTVGYTNLINSLMSKGVISLANQSPVQISSFAFRILLELSLIQIF 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00029 793 Pfam CID domain 84 181 IPR006569 -
Gabi3628g00029 793 CDD CID_Pcf11 73 190 IPR047415 -
Gabi3628g00029 793 ProSiteProfiles CID domain profile. 65 193 IPR006569 -
Gabi3628g00029 793 MobiDBLite consensus disorder prediction 655 693 - -
Gabi3628g00029 793 Gene3D - 63 191 IPR008942 -
Gabi3628g00029 793 SMART 558neu5 68 190 IPR006569 -
Gabi3628g00029 793 FunFam polyadenylation and cleavage factor homolog 4 62 190 - -
Gabi3628g00029 793 MobiDBLite consensus disorder prediction 722 736 - -
Gabi3628g00029 793 MobiDBLite consensus disorder prediction 713 737 - -
Gabi3628g00029 793 SUPERFAMILY ENTH/VHS domain 65 192 IPR008942 -
Gabi3628g00029 793 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 60 777 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00029 Gabi-Chr3628 226677 232854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00029 12 435 C2H2 Transcription Factor Family AT4G04885 48.148 2.68e-100 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00029 K14400 - gmx:100794796 1129.01