Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00028 ATGTACTCTCAAAATCTGATACTTTCCCCAGAAAACCCTAGATCGCTGACGTTTTCTTCAAAACCGATGAGCAATGAGATCGCCATCGCCCAGAAGCCTCCCCCTTCAATTCTCGTTGGCCGGTTCAAGGCTCTCCTCAAGGAAAGGGACGACGACGTTAGGGCCTCCTCCGGTGCCCCCGTGCCGCCGCCCACCACCGACGAAATCGTGCAGATTTACGAGTTGCTCTTGTCGGAACTCACATGCAACTTGAAGCCCATCATCACCGATCTCACCATCATTGCCGAACAGCAGAGGGAGCATGCCAAGGGCATCGCTGATGCAATTTGCAATCGGATTCTTGAGGTGCCTCCAGATCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATTGTGAAGAATTTTGGTCAGGAATATGTTAGATACTTCTCTTTACGTCTGCCTGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGCCATCTCTTTGGCACCTGGTCCAAAGTCTTTCGACCTTCTGTCCTATGCAAGATTGAAGCTCAATTACAATTTTCTCAAGCAGTTAATACTCAATCATCCACCATCAATCCCATCAGGGCATCTGAATCTCCTCGACCAACTCATGGCATACATGTTAATCCAAAGTACTTGCGGCAGTTGGAGCGCTCAACTGTTGATAGTGTTGGTGGTGAAAAGTTGGACTCATCAGGAAATGCTAGTAATACAAGTTTTGGCCTAGCTAGTAAGATGCATCAATTTGTATCCAGCAGTAGTAGGCCTGGAATATCCTCATCACCTTCAAGAATTGGAATTGATATGCCTTCATCTGCATCTATGGATGATTATGCAGTTGACAATTCTGCTGGCAGGATAGTTGAGAGAGAGTCTCCTAATCCTGTTGTTGATTATGGAGTAGCCAAAATATTAGGTAGAGATGAAGAGTTGAGTAAATGGCAGCAAAAGCAGTATTCTGCTGATGGTCGAAATCGATTTCAAACTTCTATGACATACAGCCTTAGTAATGGACATCATCGTCAAAGTCCAAGAGCTCTAATTGATGCATATGGCAGTGACAAAAGACAAGAAACTCCAAGCAGTAAGCCTTTCTTAGTTGAACGGCTGGATAGAAATGGTATAGACAACAAGTTGTTGTCAACATCATGGCAGAATACTGAAGAGAAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGGAATAATGGTTTTTTTCCATCAGCAAATGGTTTCTCCCGGGATAGGCCTGTTATTGTTGCAGCTAATGCAACTTTGGCAGAGGAAGATAATGGAAAGGGTTGGTCTAGTGGACCTCAGCTTCTTCAAGTAGATGATTCCTCTGTTATAGCAGAAGATGCATTTGCCTCTTCGACTTATGGTCGTGTATCCCTGGGTCAGGTATCTGGATTCCAAAATCAAATAAATCATAGTCTTGGCTCCTGTCAACCTCATGATGATTGGAAGATTTCTCATCATCCTTCTAATTCTTCACAACATTTCTTTAATAATAGGGGGCGAGCAAGGAGTCTTCTGATGCCTCCTATTGATAATATTCCCAATACAGATGTAAACCCATATCGGATTCGACCTGCGGTGTCAAGGATGGTTTCTGGTCTACCCTCTAATATGGAGGCTCGTTCACCAGTTTTGCCAGCATCTTTTGAAATAAGGCCTTCTGTAAATGTGCTTGCCACTCATCCTCCCACCTTAAATCCAATATTTCCCTTGCAAAAACATGTTAGGAGTCAGCTCGAAGCTATAAATACTAGTAACCCTATTGTGAATCATGGTCCAAATAAACCCTCGTTTATGCCCGAACAGTCGTTTGACAGTATTGAGAACAAGGATGCAAGTAAAGCAAAGATACATCAGTTGCCTAATCAGTTTGCTGGACTGATTTCGTCCAACCAGAGGAACCGTGGCCAAGCACCACAACTACAGTTTTTTCCATCTCAGGATCCTTCAGCCTCTCAATTTAGTCATGGGAGCTCTTTGCAAGGGCATGGTGCTTCTATAAGTAAAGCTATGTCAAATCCACGACCTGCTATACAATTCTCTTTACCAGGAAGTATTGCAAATAACCCTTTACATTTACAGGGGGGAGCCCTTCCACCTTTACCTTCAGGTCGCCCTCCTGCTCCATCACAGATGATGCCTCATCCAAATGCTAGTCCATTTGTGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATCAATTCACTTATGTCGAAAGGGGTGATCTCATTGGCTAACCAGTCCCCTGTACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGGTTCGTCATGAGTCTGCAGTCAGTGCCTTATATGGCGATCTCCCTAGACAATGCACAACTTGTGGGCTCCGATTCAAATGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAACCGGATGTCTAAAAGTCGTAAGCAGAAGCCCTCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGCACAGATTCAGTTCCGGGCTTTTTGCCAATTGAAACCACAGAGGAAAAGCAAGATCATGAAGAGTTGGCAGTGCCAGCAGAAGAGGACCAGAATACATGTGCATTATGCGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCAATGCACCGACAGGAGCAACAGCAGGCATGGAAAGGTCACAGTTAGGCCCGATTATTCATGCTAAATGCAGATCGGAGTCAAGTATGGCCCCCTCTGAAGAATTTCGGTTGGATGAAGGGGGTGCCAATGAGGAGGGTTCTCAAAGAAAACGAATGCGGAGTTGA 2919 0.4454 MYSQNLILSPENPRSLTFSSKPMSNEIAIAQKPPPSILVGRFKALLKERDDDVRASSGAPVPPPTTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICNRILEVPPDQKLPSLYLLDSIVKNFGQEYVRYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFRPSVLCKIEAQLQFSQAVNTQSSTINPIRASESPRPTHGIHVNPKYLRQLERSTVDSVGGEKLDSSGNASNTSFGLASKMHQFVSSSSRPGISSSPSRIGIDMPSSASMDDYAVDNSAGRIVERESPNPVVDYGVAKILGRDEELSKWQQKQYSADGRNRFQTSMTYSLSNGHHRQSPRALIDAYGSDKRQETPSSKPFLVERLDRNGIDNKLLSTSWQNTEEKEFDWEDMSPTLVDHSRNNGFFPSANGFSRDRPVIVAANATLAEEDNGKGWSSGPQLLQVDDSSVIAEDAFASSTYGRVSLGQVSGFQNQINHSLGSCQPHDDWKISHHPSNSSQHFFNNRGRARSLLMPPIDNIPNTDVNPYRIRPAVSRMVSGLPSNMEARSPVLPASFEIRPSVNVLATHPPTLNPIFPLQKHVRSQLEAINTSNPIVNHGPNKPSFMPEQSFDSIENKDASKAKIHQLPNQFAGLISSNQRNRGQAPQLQFFPSQDPSASQFSHGSSLQGHGASISKAMSNPRPAIQFSLPGSIANNPLHLQGGALPPLPSGRPPAPSQMMPHPNASPFVSSQQPTVGYTNLINSLMSKGVISLANQSPVQDSVGTEFNPDILKVRHESAVSALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTDSVPGFLPIETTEEKQDHEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGATAGMERSQLGPIIHAKCRSESSMAPSEEFRLDEGGANEEGSQRKRMRS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00028 972 ProSitePatterns Zinc finger C2H2 type domain signature. 806 826 IPR013087 -
Gabi3628g00028 972 CDD CID_Pcf11 73 190 IPR047415 -
Gabi3628g00028 972 Gene3D - 63 191 IPR008942 -
Gabi3628g00028 972 MobiDBLite consensus disorder prediction 655 693 - -
Gabi3628g00028 972 SUPERFAMILY ENTH/VHS domain 65 192 IPR008942 -
Gabi3628g00028 972 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 60 957 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gabi3628g00028 972 MobiDBLite consensus disorder prediction 722 736 - -
Gabi3628g00028 972 Pfam CID domain 84 181 IPR006569 -
Gabi3628g00028 972 MobiDBLite consensus disorder prediction 945 972 - -
Gabi3628g00028 972 MobiDBLite consensus disorder prediction 942 972 - -
Gabi3628g00028 972 ProSiteProfiles CID domain profile. 65 193 IPR006569 -
Gabi3628g00028 972 SMART 558neu5 68 190 IPR006569 -
Gabi3628g00028 972 FunFam polyadenylation and cleavage factor homolog 4 62 190 - -
Gabi3628g00028 972 MobiDBLite consensus disorder prediction 713 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00028 Gabi-Chr3628 225628 232854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00028 706 972 C2H2 Transcription Factor Family AT4G04885 62.313 2.84e-102 336