Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00027 ATGAGCAATGAGATCGCCATCGCCCAGAAGCCTCCCCCTTCAATTCTCGTTGGCCGGTTCAAGGCTCTCCTCAAGGAAAGGGACGACGACGTTAGGGCCTCCTCCGGTGCCCCCGTGCCGCCGCCCACCACCGACGAAATCGTGCAGATTTACGAGTTGCTCTTGTCGGAACTCACATGCAACTTGAAGCCCATCATCACCGATCTCACCATCATTGCCGAACAGCAGAGGGAGCATGCCAAGGGCATCGCTGATGCAATTTGCAATCGGATTCTTGAGGTGCCTCCAGATCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATTGTGAAGAATTTTGGTCAGGAATATGTTAGATACTTCTCTTTACGTCTGCCTGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGCCATCTCTTTGGCACCTGGTCCAAAGTCTTTCGACCTTCTGTCCTATGCAAGATTGAAGCTCAATTACAATTTTCTCAAGCAGTTAATACTCAATCATCCACCATCAATCCCATCAGGGCATCTGAATCTCCTCGACCAACTCATGGCATACATGTTAATCCAAAGTACTTGCGGCAGTTGGAGCGCTCAACTGTTGATAGTGTTGGTGGTGAAAAGTTGGACTCATCAGGAAATGCTAGTAATACAAGTTTTGGCCTAGCTAGTAAGATGCATCAATTTGTATCCAGCAGTAGTAGGCCTGGAATATCCTCATCACCTTCAAGAATTGGAATTGATATGCCTTCATCTGCATCTATGGATGATTATGCAGTTGACAATTCTGCTGGCAGGATAGTTGAGAGAGAGTCTCCTAATCCTGTTGTTGATTATGGAGTAGCCAAAATATTAGGTAGAGATGAAGAGTTGAGTAAATGGCAGCAAAAGCAGTATTCTGCTGATGGTCGAAATCGATTTCAAACTTCTATGACATACAGCCTTAGTAATGGACATCATCGTCAAAGTCCAAGAGCTCTAATTGATGCATATGGCAGTGACAAAAGACAAGAAACTCCAAGCAGTAAGCCTTTCTTAGTTGAACGGCTGGATAGAAATGGTATAGACAACAAGTTGTTGTCAACATCATGGCAGAATACTGAAGAGAAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGGAATAATGGTTTTTTTCCATCAGCAAATGGTTTCTCCCGGGATAGGCCTGTTATTGTTGCAGCTAATGCAACTTTGGCAGAGGAAGATAATGGAAAGGGTTGGTCTAGTGGACCTCAGCTTCTTCAAGTAGATGATTCCTCTGTTATAGCAGAAGATGCATTTGCCTCTTCGACTTATGGTCGTGTATCCCTGGGTCAGGTATCTGGATTCCAAAATCAAATAAATCATAGTCTTGGCTCCTGTCAACCTCATGATGATTGGAAGATTTCTCATCATCCTTCTAATTCTTCACAACATTTCTTTAATAATAGGGGGCGAGCAAGGAGTCTTCTGATGCCTCCTATTGATAATATTCCCAATACAGATGTAAACCCATATCGGATTCGACCTGCGGTGTCAAGGATGGTTTCTGGTCTACCCTCTAATATGGAGGCTCGTTCACCAGTTTTGCCAGCATCTTTTGAAATAAGGCCTTCTGTAAATGTGCTTGCCACTCATCCTCCCACCTTAAATCCAATATTTCCCTTGCAAAAACATGTTAGGAGTCAGCTCGAAGCTATAAATACTAGTAACCCTATTGTGAATCATGGTCCAAATAAACCCTCGTTTATGCCCGAACAGTCGTTTGACAGTATTGAGAACAAGGATGCAAGTAAAGCAAAGATACATCAGTTGCCTAATCAGTTTGCTGGACTGATTTCGTCCAACCAGAGGAACCGTGGCCAAGCACCACAACTACAGTTTTTTCCATCTCAGGATCCTTCAGCCTCTCAATTTAGTCATGGGAGCTCTTTGCAAGGGCATGGTGCTTCTATAAGTAAAGCTATGTCAAATCCACGACCTGCTATACAATTCTCTTTACCAGGAAGTATTGCAAATAACCCTTTACATTTACAGGGGGGAGCCCTTCCACCTTTACCTTCAGGTCGCCCTCCTGCTCCATCACAGATGATGCCTCATCCAAATGCTAGTCCATTTGTGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATCAATTCACTTATGTCGAAAGGGGTGATCTCATTGGCTAACCAGTCCCCTGTACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGGTTCGTCATGAGTCTGCAGTCAGTGCCTTATATGGCGATCTCCCTAGACAATGCACAACTTGTGGGCTCCGATTCAAATGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAACCGGATGTCTAAAAGTCGTAAGCAGAAGCCCTCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGCACAGATTCAGTTCCGGGCTTTTTGCCAATTGAAACCACAGAGGAAAAGCAAGATCATGAAGAGTTGGCAGTGCCAGCAGAAGAGGACCAGAATACATGTGCATTATGCGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCAATGCACCGACAGGAGCAACAGCAGGCATGGAAAGGTCACAGTTAGGCCCGATTATTCATGCTAAATGCAGATCGGAGTCAAGTATGGCCCCCTCTGAAGAATTTCGGTTGGATGAAGGGGGTGCCAATGAGGAGGGTTCTCAAAGAAAACGAATGCGGAGTTGA 2853 0.4462 MSNEIAIAQKPPPSILVGRFKALLKERDDDVRASSGAPVPPPTTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICNRILEVPPDQKLPSLYLLDSIVKNFGQEYVRYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFRPSVLCKIEAQLQFSQAVNTQSSTINPIRASESPRPTHGIHVNPKYLRQLERSTVDSVGGEKLDSSGNASNTSFGLASKMHQFVSSSSRPGISSSPSRIGIDMPSSASMDDYAVDNSAGRIVERESPNPVVDYGVAKILGRDEELSKWQQKQYSADGRNRFQTSMTYSLSNGHHRQSPRALIDAYGSDKRQETPSSKPFLVERLDRNGIDNKLLSTSWQNTEEKEFDWEDMSPTLVDHSRNNGFFPSANGFSRDRPVIVAANATLAEEDNGKGWSSGPQLLQVDDSSVIAEDAFASSTYGRVSLGQVSGFQNQINHSLGSCQPHDDWKISHHPSNSSQHFFNNRGRARSLLMPPIDNIPNTDVNPYRIRPAVSRMVSGLPSNMEARSPVLPASFEIRPSVNVLATHPPTLNPIFPLQKHVRSQLEAINTSNPIVNHGPNKPSFMPEQSFDSIENKDASKAKIHQLPNQFAGLISSNQRNRGQAPQLQFFPSQDPSASQFSHGSSLQGHGASISKAMSNPRPAIQFSLPGSIANNPLHLQGGALPPLPSGRPPAPSQMMPHPNASPFVSSQQPTVGYTNLINSLMSKGVISLANQSPVQDSVGTEFNPDILKVRHESAVSALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTDSVPGFLPIETTEEKQDHEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGATAGMERSQLGPIIHAKCRSESSMAPSEEFRLDEGGANEEGSQRKRMRS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00027 950 ProSitePatterns Zinc finger C2H2 type domain signature. 784 804 IPR013087 -
Gabi3628g00027 950 MobiDBLite consensus disorder prediction 180 200 - -
Gabi3628g00027 950 MobiDBLite consensus disorder prediction 920 950 - -
Gabi3628g00027 950 MobiDBLite consensus disorder prediction 923 950 - -
Gabi3628g00027 950 Pfam CID domain 62 159 IPR006569 -
Gabi3628g00027 950 CDD CID_Pcf11 51 168 IPR047415 -
Gabi3628g00027 950 SMART 558neu5 46 168 IPR006569 -
Gabi3628g00027 950 MobiDBLite consensus disorder prediction 691 715 - -
Gabi3628g00027 950 ProSiteProfiles CID domain profile. 43 171 IPR006569 -
Gabi3628g00027 950 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 935 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gabi3628g00027 950 MobiDBLite consensus disorder prediction 633 671 - -
Gabi3628g00027 950 SUPERFAMILY ENTH/VHS domain 43 170 IPR008942 -
Gabi3628g00027 950 MobiDBLite consensus disorder prediction 700 714 - -
Gabi3628g00027 950 FunFam polyadenylation and cleavage factor homolog 4 40 168 - -
Gabi3628g00027 950 Gene3D - 41 169 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00027 Gabi-Chr3628 225628 232854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00027 684 950 C2H2 Transcription Factor Family AT4G04885 62.313 1.83e-102 336