Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00026 ATGTTTAACCCAAACGTGTTTGATTCTCAACAACACTTGCTTGATATGTCATCATCTCACAAGACTTCCTCAGAGAGTGATGATTTCGAGATTACACCCGGAAACGACATCATGGAAGCTCCTCCTTCCGGTGACGACCAAGATCCGAACAAACCACCCAAAAAGAAGCGCTATCATCGCCACACACAGCACCAAATACAAGAGATGGAATCTTTCTTCAAGGAGTGCCCTCACCCAGATGACAAGCAAAGAAAAGCACTAGGCCTTGAACTCGGGTTAGAGCCTTTGCAAATCAAGTTTTGGTTCCAAAACAAGCGAACCCAAGTTAAGACACAACAAGAACGCCATGAGAATAATATGTTGAGGAATGAGAATGAAAAACTTCGAGCTGAGAACAATAGGTTCAAAGAGGCACTAAGTAACGCTACATGCCCTAACTGTGGAAACCCTGCCGCTCTTGGGGAGATGTCATTTGACGAGCAACACTTGAGGATTGAGAATAATCGATTAAGAGAAGAGATTGAAAGGTTGACGTCAGGAATGGGAGCAAAATATGGCGGAAAACCTGGGTCTTCTTACTCTAACATGTCATCACATAATCACATGGCTTCTCGCTCTCTTGATATAGGAGTTGGTAACTATGGAGCACAGTCAGGCATGGTAGGGGAAATGTATGGAGGCAATGACTCTCTTAGGTCACTCCCAGTTCCTTCTGATTCTGACAAACCCATGATTGTGGAGCTTGCTGTTGCAGCAATGGAGGAACTAACAAGGTTGGCTCTGGCTGGAGACCCTTTATGGGTCCCTGCCAACCACTGTAGTGAGATTCTAAATGAAGATCAATACTTGATGAATTTCCCTAGGGGAATAGGTCCAAAACCCATTGGGTATAAATCAGAAGCTTCAAGGGAATCCGTGGTGGTTATCATGAATCATATTAACCTCATTGAGATCCTTATGGATGTGAATCAATGGGCAACTGTGTTTTGCGGTATTGTTTCAAGAGCAATGACACTCGAAGTTCTGTCAACTGGAGTGGCAGGAAACTACAATGGAGCCTTGCAAGTGATGTCAGCTGAGTTCATGGTCCCTTCGCCACTTGTTCCAACTCGTGACAACTATTTTGTAAGATACTGTAAGCAGCACCCAGATGGGTCATGGGCGGTGGTTGATGTTTCCTTGGATAATCTGCGACCAAGTACAATCTTAAGAAGCCGAAGACGCCCTTCTGGTTGTTTAATTCAAGAATTGCCAAATGGTTACTCAAAGGTTACATGGGTTGAACATGTAGAAGTGGATGATAGCATGGTGCATAATCATTATAAACTTCTAGTTAATTCTTGCCTTGCATTTGGAGCTAAACGATGGGTGGCTTCATTAGATAGACAATGCGAACGTCTTGCTAGTACAATGGCCACCAACATACCACCGGGGGACCGTTGTGTGATAACCAGTGCTGAGGGAAGGAAAAGTATGCTGAAGCTGGCAGAGAGAATGATAATAAGCTTTAGTAATGGTGTTGGTGCTTCTACGGCACATACTTGGACAGCACTATCGCGACCTAATTGTGATGATGTAAGGGTTATGACCAGAAAGTGTTTGGATGATCCGGGGAGACCTCCCGGTATAGTTCTCAGTGCTGCAACTTCTTTCTGGCTTCCAGTTCCTCCAAAGAGGGTTTTTGATTTTCTTCGAAATGAAAACTCAAGAAGTCAGTGGGATATTCTCTCCAATGGGGGTCAAGTTCAAGAAATGGCACACATAGCAAATGGTCGTGATCCTGGTAACTGTGTCTCTTTACTTCGTGTCAATAGTACAAATTCCAGCCAAAGCAATATGCTTATACTTCAAGAGAGTTGCACTGATTCAACAGGCTCATACGTGGTTTATGCTCCTGTTGACATAATTGCTATGAACGTAGTGTTGAATGGGGGTGATCCAGATTACGTGGCCCTGCTTCCATCGGGTTTTGCCATTCTTCCAGATGGGCCTGGGCTGAATGGAGGGCCCATAGTTGAGGTTGGAACCGGAGGGTGTCTTCTGACTGTTGCTTTTCAGATATTGGTGGATTCAGTTCCAACGGCAAAACTCTCCATTGGTTCTGTCACTACAGTTAACAGTCTCATTAAGTGCACAATAGAAAAAATCAAAGCTGCAGTGAGTGATGGGTGA 2172 0.4434 MFNPNVFDSQQHLLDMSSSHKTSSESDDFEITPGNDIMEAPPSGDDQDPNKPPKKKRYHRHTQHQIQEMESFFKECPHPDDKQRKALGLELGLEPLQIKFWFQNKRTQVKTQQERHENNMLRNENEKLRAENNRFKEALSNATCPNCGNPAALGEMSFDEQHLRIENNRLREEIERLTSGMGAKYGGKPGSSYSNMSSHNHMASRSLDIGVGNYGAQSGMVGEMYGGNDSLRSLPVPSDSDKPMIVELAVAAMEELTRLALAGDPLWVPANHCSEILNEDQYLMNFPRGIGPKPIGYKSEASRESVVVIMNHINLIEILMDVNQWATVFCGIVSRAMTLEVLSTGVAGNYNGALQVMSAEFMVPSPLVPTRDNYFVRYCKQHPDGSWAVVDVSLDNLRPSTILRSRRRPSGCLIQELPNGYSKVTWVEHVEVDDSMVHNHYKLLVNSCLAFGAKRWVASLDRQCERLASTMATNIPPGDRCVITSAEGRKSMLKLAERMIISFSNGVGASTAHTWTALSRPNCDDVRVMTRKCLDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRNENSRSQWDILSNGGQVQEMAHIANGRDPGNCVSLLRVNSTNSSQSNMLILQESCTDSTGSYVVYAPVDIIAMNVVLNGGDPDYVALLPSGFAILPDGPGLNGGPIVEVGTGGCLLTVAFQILVDSVPTAKLSIGSVTTVNSLIKCTIEKIKAAVSDG 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00026 723 CDD START_ArGLABRA2_like 242 465 - -
Gabi3628g00026 723 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3628g00026 723 SUPERFAMILY Bet v1-like 239 468 - -
Gabi3628g00026 723 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gabi3628g00026 723 MobiDBLite consensus disorder prediction 1 64 - -
Gabi3628g00026 723 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Gabi3628g00026 723 SUPERFAMILY Bet v1-like 487 716 - -
Gabi3628g00026 723 Gene3D - 306 467 IPR023393 -
Gabi3628g00026 723 ProSiteProfiles START domain profile. 238 469 IPR002913 GO:0008289
Gabi3628g00026 723 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 51 720 IPR042160 -
Gabi3628g00026 723 FunFam Homeobox-leucine zipper protein HDG1 43 128 - -
Gabi3628g00026 723 CDD homeodomain 55 113 IPR001356 GO:0003677
Gabi3628g00026 723 Pfam START domain 248 466 IPR002913 GO:0008289
Gabi3628g00026 723 Coils Coil 160 180 - -
Gabi3628g00026 723 Coils Coil 111 141 - -
Gabi3628g00026 723 Gene3D - 43 129 - -
Gabi3628g00026 723 SMART HOX_1 53 116 IPR001356 GO:0003677
Gabi3628g00026 723 FunFam Homeobox-leucine zipper protein GLABRA 2 247 465 - -
Gabi3628g00026 723 SUPERFAMILY Homeodomain-like 39 113 IPR009057 -
Gabi3628g00026 723 SMART START_1 247 466 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00026 Gabi-Chr3628 208967 212819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00026 1 721 Homeobox Transcription Factor Family AT4G04890 73.819 0.0 1112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3628g00026 START 3.9e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00026 K09338 - qsu:112016283 1157.13