Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00024 ATGGCACAAGAAGAAGACTCACCAGGGGAGTCCTCACTCATCATTTGCGATATTTGTGTAGAAGCAAAAGAGACTGACGAGATGTTCGGGAACCAGACATGTGACCATTCCTTCTGTTCTGACTGTGTCACCAAACATGTGGCCACAAAGATCGAACAGAGCATAGCAGTTGTTCCGTGCCCTGGTTTGAATTGCAAGGGTGTGTTGGAGATTGATGCTTGCAGGTCAATGCTTCCAAAAAACGTGCTTGACAAGTGGGATGACGCACTGTGTGAGGCTCTTTTGCTCACAGTTCCAAAATTCTATTGCCCTTTTAAAGATTGTTCTGCTATGCTGCTTGATGACAATGAAGGGGAAGGTATTAGGGAGTCTGAGTGCCCTTTTTGCCATAGACTCTTCTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGGTTGAGTGTGAGGTGTTCCAGACACTGAATGAAGATGAGAGAGCAAAGGAAGATCTCCTAGTTAGAGAGCTTGTTAATGAAAAGAAATGGAGTAGGTGCCCTCAATGCAAGTTCTATGTGGAAAAGACTGAAGGGTGTATGCACATCATCTGCAGGTGCCAATTTGGGTTTTGCTACGCATGCGGAAAACAATGTAGCAAAAGAGAATGGATGTCTGCTCACAGTGGCTGCCAACAATAA 672 0.4554 MAQEEDSPGESSLIICDICVEAKETDEMFGNQTCDHSFCSDCVTKHVATKIEQSIAVVPCPGLNCKGVLEIDACRSMLPKNVLDKWDDALCEALLLTVPKFYCPFKDCSAMLLDDNEGEGIRESECPFCHRLFCARCHVPWHPGVECEVFQTLNEDERAKEDLLVRELVNEKKWSRCPQCKFYVEKTEGCMHIICRCQFGFCYACGKQCSKREWMSAHSGCQQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00024 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 94 IPR013083 -
Gabi3628g00024 223 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
Gabi3628g00024 223 ProSiteProfiles TRIAD supradomain profile. 12 223 IPR044066 -
Gabi3628g00024 223 ProSiteProfiles Zinc finger RING-type profile. 16 61 IPR001841 -
Gabi3628g00024 223 CDD BRcat_RBR_unk 99 148 - -
Gabi3628g00024 223 FunFam RBR-type E3 ubiquitin transferase 11 97 - -
Gabi3628g00024 223 SUPERFAMILY RING/U-box 158 212 - -
Gabi3628g00024 223 Pfam IBR domain, a half RING-finger domain 164 209 IPR002867 GO:0008270
Gabi3628g00024 223 Pfam IBR domain, a half RING-finger domain 100 147 IPR002867 GO:0008270
Gabi3628g00024 223 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 214 IPR031127 GO:0004842|GO:0016567
Gabi3628g00024 223 Gene3D - 145 223 - -
Gabi3628g00024 223 SUPERFAMILY RING/U-box 10 93 - -
Gabi3628g00024 223 SMART ibrneu5 157 221 IPR002867 GO:0008270
Gabi3628g00024 223 SMART ibrneu5 84 147 IPR002867 GO:0008270
Gabi3628g00024 223 CDD Rcat_RBR_unk 173 209 - -
Gabi3628g00024 223 Pfam Zinc finger, C3HC4 type (RING finger) 16 61 IPR018957 GO:0046872
Gabi3628g00024 223 SUPERFAMILY RING/U-box 87 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00024 Gabi-Chr3628 169496 170311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00024 9 206 C3H Transcription Factor Family AT2G19610 27.053 7.40e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00024 K11975 - qsa:O6P43_027978 351.673