Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3628g00023 | ATGGCACAACAAGAAGACTCACTAGGGGAGTCCTCACTCATCATTTGCGAGATCTGTGTAGAAGCAAAAGAGACTGATGAGATGTTCATGAACCAGACATGTGACCATTCCTTCTGTTCTGACTGTGTCACCAAACATGTGGCCACAAAGATTCAAGAGAGCATAACAGTTGTTTCGTGCCCGGGTTTGAACTGCAAGGGTGTCTTGGAGATTGATGCTTGCAGGTCAATGCTTCCAAAAAACGTGCTTGACAAGTGGAATGACGCACTGTGTGAGGCTTTTTTACTTACAGTTCCAAAATTCTATTGTCCCTTTAAAGACTGTTCTGCTATGCTGCTTGATGACAAAGAAGAGGGATGCATTAGAGAGTCTGAATGCCCTTTTTGCCATAGACTCTTCTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGTTTGAGTGTGAGGAGTTTCAGACACTGAATGAAGATAAAAGAGCGAGGGATGATCTACTTCTTATAGAGCTTGCCAATGAAAAGAAATGGAGTAGGTGCCCTCAATGCAAGTTCTATGTGGAAAAGACTGAAGGGTGTTTGCACATCACCTGCAGGTGCCAATTTGAGTTTTGCTACGCATGCGGAAAACAATGGACTTCTACTCACGGTGGCTGCCAATGA | 654 | 0.445 | MAQQEDSLGESSLIICEICVEAKETDEMFMNQTCDHSFCSDCVTKHVATKIQESITVVSCPGLNCKGVLEIDACRSMLPKNVLDKWNDALCEAFLLTVPKFYCPFKDCSAMLLDDKEEGCIRESECPFCHRLFCARCHVPWHPGFECEEFQTLNEDKRARDDLLLIELANEKKWSRCPQCKFYVEKTEGCLHITCRCQFEFCYACGKQWTSTHGGCQ | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3628g00023 | 217 | SUPERFAMILY | RING/U-box | 10 | 93 | - | - | |
| Gabi3628g00023 | 217 | SMART | ibrneu5 | 84 | 147 | IPR002867 | GO:0008270 | |
| Gabi3628g00023 | 217 | SMART | ibrneu5 | 157 | 216 | IPR002867 | GO:0008270 | |
| Gabi3628g00023 | 217 | ProSitePatterns | Zinc finger RING-type signature. | 34 | 43 | IPR017907 | - | |
| Gabi3628g00023 | 217 | Gene3D | - | 145 | 217 | - | - | |
| Gabi3628g00023 | 217 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 16 | 209 | IPR031127 | GO:0004842|GO:0016567 | |
| Gabi3628g00023 | 217 | Pfam | IBR domain, a half RING-finger domain | 86 | 147 | IPR002867 | GO:0008270 | |
| Gabi3628g00023 | 217 | Pfam | IBR domain, a half RING-finger domain | 168 | 216 | IPR002867 | GO:0008270 | |
| Gabi3628g00023 | 217 | SUPERFAMILY | RING/U-box | 159 | 216 | - | - | |
| Gabi3628g00023 | 217 | FunFam | RBR-type E3 ubiquitin transferase | 11 | 97 | - | - | |
| Gabi3628g00023 | 217 | Pfam | Zinc finger, C3HC4 type (RING finger) | 16 | 61 | IPR018957 | GO:0046872 | |
| Gabi3628g00023 | 217 | ProSiteProfiles | TRIAD supradomain profile. | 12 | 217 | IPR044066 | - | |
| Gabi3628g00023 | 217 | FunFam | RBR-type E3 ubiquitin transferase | 149 | 217 | - | - | |
| Gabi3628g00023 | 217 | CDD | BRcat_RBR_unk | 99 | 150 | - | - | |
| Gabi3628g00023 | 217 | SUPERFAMILY | RING/U-box | 87 | 151 | - | - | |
| Gabi3628g00023 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 94 | IPR013083 | - | |
| Gabi3628g00023 | 217 | ProSiteProfiles | Zinc finger RING-type profile. | 16 | 61 | IPR001841 | - | |
| Gabi3628g00023 | 217 | CDD | Rcat_RBR_unk | 173 | 209 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3628g00023 | Gabi-Chr3628 | 165211 | 166007 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3628g00023 | 9 | 206 | C3H Transcription Factor Family | AT2G19610 | 28.986 | 2.04e-19 | 84.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3628g00023 | K11975 | - | qsa:O6P43_027978 | 367.081 |