Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3628g00022 | ATGGCACAACAAGAAGACGTGACCATTGGTCTTCACAGTGTAGACGACTTTTACTTCTCAGCTCTGTTGAATAATGATGACGACGACGATGATGGTGTAACTGACCTTGTTCCCATCTCTGATGAAAAATATGCTCAACAGTTGCAGTTTCAGGAGACCCTAATGGCCTCTGTCAACAACACTACCCAAAACGACATCAAAGGTTCGTCGTCGTCGTCGTCGCCATCACCCATGCTCCGCTTCATATCACCATCGTCATCATTACCATCTTCATCAAAGGCCGTTGAAGTTAACATAGACCCCAAGACAGAGCAGATAGAGTTCGTGACTGAAGAAGCAGGGGAATCCTCACTCATAATCTGTGAGATTTGTGCAGAAGCCAAAGGGAAAATCGAGATGTTCAGGAACAAGATATGTGACCATTCTTTCTGTTCTGATTGTGTCACTAAACAAGTGGCCACAAAGATTCAAGAGGGCATAACTGTTGTTTCTTGCCCTGGTTTGAACTGCAAGGGTTTGTTGGAGCTTGATGATTGCAGGTCAATGCTTCCAAAAGACGTTCTTGATAGGTGGGATGACGCACTGTGTGAGGCTCTTTTGCTCACAGTTCCAAAATTCTATTGCCCTTTTAAAGATTGTTCTGCTATGCTGCTCGATGACAATGAAGGGGAAGGTATTAGGGAGTCTGAGTGCCCTTTTTGCCATAGACTCTTCTGTGCAAGGTGTTATGTTCCTTGGCATCCTGGGGTTCTGTGTGAGGTGTTCCTGACACTGAATGAAGATGAGAGAGCAAGGGAAGATCTTCTTGTTAGAGAGCTTGCTAATCAAAAGAAATGGAGTAGGTGTCCTCAATGCAAGTTCTATGTGGAAAAGACTGAAGGGTGTTTGCATATCACCTGCAGGTGCAAATTTCAGTTTTGCTATGCGTGCGGACAACAATGGACTTCTACCCATGGTGGCTGCCAAAGAAATTAG | 975 | 0.4472 | MAQQEDVTIGLHSVDDFYFSALLNNDDDDDDGVTDLVPISDEKYAQQLQFQETLMASVNNTTQNDIKGSSSSSSPSPMLRFISPSSSLPSSSKAVEVNIDPKTEQIEFVTEEAGESSLIICEICAEAKGKIEMFRNKICDHSFCSDCVTKQVATKIQEGITVVSCPGLNCKGLLELDDCRSMLPKDVLDRWDDALCEALLLTVPKFYCPFKDCSAMLLDDNEGEGIRESECPFCHRLFCARCYVPWHPGVLCEVFLTLNEDERAREDLLVRELANQKKWSRCPQCKFYVEKTEGCLHITCRCKFQFCYACGQQWTSTHGGCQRN | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3628g00022 | 324 | FunFam | RBR-type E3 ubiquitin transferase | 254 | 324 | - | - | |
| Gabi3628g00022 | 324 | MobiDBLite | consensus disorder prediction | 62 | 89 | - | - | |
| Gabi3628g00022 | 324 | SUPERFAMILY | RING/U-box | 263 | 322 | - | - | |
| Gabi3628g00022 | 324 | ProSiteProfiles | TRIAD supradomain profile. | 117 | 324 | IPR044066 | - | |
| Gabi3628g00022 | 324 | SUPERFAMILY | RING/U-box | 193 | 255 | - | - | |
| Gabi3628g00022 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 199 | IPR013083 | - | |
| Gabi3628g00022 | 324 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 71 | 314 | IPR031127 | GO:0004842|GO:0016567 | |
| Gabi3628g00022 | 324 | CDD | Rcat_RBR_unk | 278 | 314 | - | - | |
| Gabi3628g00022 | 324 | SMART | ibrneu5 | 189 | 252 | IPR002867 | GO:0008270 | |
| Gabi3628g00022 | 324 | SMART | ibrneu5 | 262 | 321 | IPR002867 | GO:0008270 | |
| Gabi3628g00022 | 324 | FunFam | RBR-type E3 ubiquitin transferase | 116 | 202 | - | - | |
| Gabi3628g00022 | 324 | Gene3D | - | 250 | 324 | - | - | |
| Gabi3628g00022 | 324 | Pfam | IBR domain, a half RING-finger domain | 205 | 252 | IPR002867 | GO:0008270 | |
| Gabi3628g00022 | 324 | Pfam | IBR domain, a half RING-finger domain | 270 | 321 | IPR002867 | GO:0008270 | |
| Gabi3628g00022 | 324 | ProSiteProfiles | Zinc finger RING-type profile. | 121 | 166 | IPR001841 | - | |
| Gabi3628g00022 | 324 | SUPERFAMILY | RING/U-box | 115 | 198 | - | - | |
| Gabi3628g00022 | 324 | ProSitePatterns | Zinc finger RING-type signature. | 139 | 148 | IPR017907 | - | |
| Gabi3628g00022 | 324 | CDD | BRcat_RBR_unk | 204 | 253 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3628g00022 | Gabi-Chr3628 | 160913 | 162254 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3628g00022 | 114 | 311 | C3H Transcription Factor Family | AT2G19610 | 28.846 | 3.64e-19 | 85.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3628g00022 | K11975 | - | qsa:O6P43_027978 | 402.519 |