LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3628g00011	ATGGGTTCCTTCCATTTGTTCCTTCTTCTTCTAACTTTGTTTTCCTTCTCTGTTCTTTGCTCTGCCTCTCCCATCATCCAAGCTGCTATCCATCAAGGTCCCAAAGCTTACTATAACTGCACAAGTAACACCACTTTTGCTGCCCTTAGCTATTACCGTTCCAACATCAAAACACTACTAGATTGGCTCTCCTCCAATGCCACTAGCCATGCCAGATCCTACAACGCCACAGTTGCTAGCAAAAACACTGTTGACACTGTCCATGGTTTCTTCCTTTGTACAGAAGACATCGACCCAAAAAGCTGCCAAGAGTGCGTGATAGAAGCAGCCAAACTTATATTATCACTCTGCACGATGGCAAAAGAAGCCATAGTTTGGTACCAAGTGTGCTTTGTCCGCTACTCTGATCGTCTTTTCTTCTCCACCGTAGAGGAGAGTCCTAAAATGACCTTTATGAACGATCAGGATTATGTGGGTGAGGTTGGGCGTTTCAACAATATTCTGTGGGATATGATGAACGATTTGAGAATTGTGGCAGCAAATGCTTCTAATAAATTGGCTGACATGTCAGTGAACATCTCAGACAACCAAAAGGTATATGGCTACGCTTGGTGCGTCCTATACCTATCCATGGAGAATTGCAGCTGGTGTCTTAGCGATGCCATAGCAGAAATTCCAACCAGTTGCTGCAGAGGAAAATCTGGAGGAAATATATTATATCCCAGTTGTGGTGTTAGATACGAATTATATCCATTCCACAAGGCACACAAGATAGGTTCTTGGATGCCCCCGCCACACCGTTTGGCTCCACCAGGAAAAGGAAAACAGAAGACAATAACAATAATTGTGATCGTTGTTCCAATTGTTGTTTCGCTGGTGCTTTTAGCTTTGGGCTGCTGCTGCTTTTTATACAGAAAAGAAAGAAAGAATCAACATGATATTCTCAAAGAAAGCTTTGGGAATGACATTACTGCTTTGGAGTCCTTGCAATTTGAATTAGCCAAAATTGAAGCTGCAACTAACAGATTTGCTAAAGAAAACTGGATAGGCAAAGGCGGATTTGGAGAAGTCTATAAGGGTATTCTTCCAGATGGACAAGAAATAGCTGTGAAGAGGCTTACAGGAAGGTCCGGGCAAGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATAGCCCAGCTTCAACACAGAAATCTAGTGAGGTTACTAGGATTTTGCTTGGAAGGTGAAGAAAAGATACTCATTTATGAGTACATGTCAAACAAGAGCCTTGATTATTTTTTATTTGATACCCGGAAGCAAGGAATATTATCTTGGTCTGAACGTCATAAAATCATCATAGGAGTTACTCGAGGAATTCTGTATCTTCATGAGGATTCTTGCCTCAAAATAATACATCGTGATTTAAAACCTAGTAATATTTTGTTAGATAGTAATATGAATCCAAAAATATCAGATTTTGGTATGGCTAGAATTGTTGCTGCAGATCAAATTGAGGACAATACGGGCAGAATTGTAGGGACATATGGTTACATGTCTCCAGAATATGCAATGCACGGACACTTTTCTGTGAAATCCGATGTTTTTAGTTTCGGAGTCATGGTTCTAGAGATTATTAATGGGAAGAGGAAAGGCTGTTCTTCTGAACCGGAATGTGTTGATGACATCCGGAGACACGCTTGGACAAAATGGACAGAGCAAACCCCACTAGAACTATTGGATCCTAATATAGAAGGACCTTATTCACAAGAAGAAGTCATCAAATGCATCCACATTGGTTTGTTATGTGTTCAAGAAGATCCAAATGATAGACCTACAATGGCAACAATTGTTTTCTACCTCAACAGCCCTTCAATCAACTTGCCATCACCTCATGAACCAGCATATTTTAAGCGTAGTAGAAAAGAGGACAACCTGACGACCAACAAGGAATTGGATAATCTCTGTGATTCCATCAACGGAATTTCTCTGACTAATTTCTTTCCTCGTTAA	1992	0.4061	MGSFHLFLLLLTLFSFSVLCSASPIIQAAIHQGPKAYYNCTSNTTFAALSYYRSNIKTLLDWLSSNATSHARSYNATVASKNTVDTVHGFFLCTEDIDPKSCQECVIEAAKLILSLCTMAKEAIVWYQVCFVRYSDRLFFSTVEESPKMTFMNDQDYVGEVGRFNNILWDMMNDLRIVAANASNKLADMSVNISDNQKVYGYAWCVLYLSMENCSWCLSDAIAEIPTSCCRGKSGGNILYPSCGVRYELYPFHKAHKIGSWMPPPHRLAPPGKGKQKTITIIVIVVPIVVSLVLLALGCCCFLYRKERKNQHDILKESFGNDITALESLQFELAKIEAATNRFAKENWIGKGGFGEVYKGILPDGQEIAVKRLTGRSGQGAVEFKNEVQVIAQLQHRNLVRLLGFCLEGEEKILIYEYMSNKSLDYFLFDTRKQGILSWSERHKIIIGVTRGILYLHEDSCLKIIHRDLKPSNILLDSNMNPKISDFGMARIVAADQIEDNTGRIVGTYGYMSPEYAMHGHFSVKSDVFSFGVMVLEIINGKRKGCSSEPECVDDIRRHAWTKWTEQTPLELLDPNIEGPYSQEEVIKCIHIGLLCVQEDPNDRPTMATIVFYLNSPSINLPSPHEPAYFKRSRKEDNLTTNKELDNLCDSINGISLTNFFPR	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3628g00011	663	Gene3D	Phosphorylase Kinase; domain 1	304	418	-	-
	Gabi3628g00011	663	SUPERFAMILY	Protein kinase-like (PK-like)	330	633	IPR011009	-
	Gabi3628g00011	663	ProSiteProfiles	Gnk2-homologous domain profile.	34	139	IPR002902	-
	Gabi3628g00011	663	Gene3D	-	34	139	IPR038408	-
	Gabi3628g00011	663	Gene3D	-	148	252	IPR038408	-
	Gabi3628g00011	663	ProSiteProfiles	Gnk2-homologous domain profile.	145	252	IPR002902	-
	Gabi3628g00011	663	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	464	476	IPR008271	GO:0004672\|GO:0006468
	Gabi3628g00011	663	FunFam	cysteine-rich receptor-like protein kinase 10	419	621	-	-
	Gabi3628g00011	663	Pfam	Salt stress response/antifungal	160	250	IPR002902	-
	Gabi3628g00011	663	Pfam	Salt stress response/antifungal	40	136	IPR002902	-
	Gabi3628g00011	663	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	39	656	-	-
	Gabi3628g00011	663	ProSitePatterns	Protein kinases ATP-binding region signature.	349	371	IPR017441	GO:0005524
	Gabi3628g00011	663	ProSiteProfiles	Protein kinase domain profile.	343	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3628g00011	663	CDD	STKc_IRAK	349	615	-	-
	Gabi3628g00011	663	Pfam	Protein kinase domain	345	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3628g00011	663	SMART	serkin_6	343	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3628g00011	663	Gene3D	Transferase(Phosphotransferase) domain 1	419	621	-	-
	Gabi3628g00011	663	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	304	418	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3628g00011	Gabi-Chr3628	68972	71994	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3628g00011	37	663	Receptor kinase-like Gene Family	AT4G05200	45.146	0.0	564

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gabi3628g00011		Pkinase	1.4e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3628g00011	-		-	gmx:100793219	1053.89