LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3628g00010	ATGATTTCTAAATCCTATCATTTCCTGCTTCTTTTTTGTTCTCTTTCTTTCCTTTTAGAGGTTGCTCTTGCTGACCCTCCATACGAAATTTGTTCCACAAGCAGTAGCTATGCAAATGGAGGTTCCTTTGAGAACAATCTAAACAAACTCCTCTCTTCTCTACCCTCCAACGCTTCAATGTCCAAATCCTATAATGCTTCTTCTGGGGTTGACCAAGATATAGTTTATGGCCTCTACATGTGCCTCGACTATGTTTCAAATGAAACTTGCAAGAACTGCATAGCCACAGCAATAGAAGATATTGTCAAACTCTGTCCCCAAACAGAAGAAGCAATTGTTTGGGAAGAGGTCTGTCAATTACGTTATTCTAATAACAATTTCTTGGGCAAATTGAATGTCACAGGGAACATAGGCAAAGATAATGTACAGAATACTTCAGAACCACAGAAATTTGAGTCTGCTGTGAGTGAGATATTGAATAATCTTACTCAGAGAGCATCTCTTAATCTTTCGGCCAACATGTATGCTACTGGAGAAGTTCCCTATGAAGACAAAACAATATATGCCTTAGTGCAGTGCACCATAGATTTATCAGCCAGCGAATGCAGTAGGTGCCTGGAAAGTGCCATAAGAGATATACCAGGTTGTTGTTATGCCTCCATCGGTGCAAGAGTTCTAAGTCGTAGCTGTTATTTGAGGTATGAATTTTACCCTTTTTATGAGGGTGCATCATCTGAACCTGCAGATTCTTTAACCGGCAACAATAAGGGAAAAAGTAAGTATGGTACAAGCAAAATATGGATGATTACAGGCATTATAGCTGCTGCAGGCTTGGCGATAATTGTTTTCAGTTGCTGCCTGTACTTTTTCATGAAGAAAAGGAATCAGAGAAGTAAGTTAAATGACAAGATATCTGACATCCCTTATATTGATCTTGGATCTCTTTGTGTAGCTACCAAAAACTTTTCTGATTCAAATAAGCTTGGCCAAGGTGGCTTTGGCCCCGTTTACAAGGGGATACTAAGTAATGGACAGGAAGTAGCAATCAAGAGGCTTTCAAACTGCTCAGAGCAGGGCACAGAGGAATTCGTTAACGAGGTTCTCCTGATAATGAAACTTCAACACAAAAATCTTGTAAGGCTTCTTGGATTTTGTGTTGATGGAGAAGAAAAGCTTCTTGTGTATGAATTTCTGCCCAATGGTAGCCTTGATGTTCTCCTTTTTGATTCAAAGCAACGTGCGCAGCTGGATTGGAGTAAACGCCTCGATATAATAAGTGGAATAGCAAAGGGAATTCTTTATCTTCATGAAGATTCTAGACTTAAAATAATTCACAGGGACCTAAAAGCAAGTAATGTGTTGCTGGACTATGACATGACACCAAAGATCTCAGACTTTGGAATGGCTAGGATATTTGCTGGAAGTGAAGATGAAGCTAGCACAGCTACAATAGTTGGCACATACGGATACATGGCTCCAGAGTATGCTATGGAGGGATTATATTCTATAAAATCTGATGTTTATGGCTTTGGAGTATTATTGCTTGAGATCATTACAGGGAGTCGTAATGCTGGTTTCTATCACTCTAAAAGTTTCCCTAGCCTTCTAGCATATGCATGGCACCTGTGGAATGAGGGAAAGGGGCTGGAGTTAAATGACCCCTTCTTATATGATTCATGCCCTGAAGATCAATTTTTAAGATACTTGAATATTGGATTGCTATGTGTTCAAGAAGATGCATATGAAAGGCCATCCATGGCTTCAGTTGTTTTAATGATGAAGAACGAATCAGCAACTCTTGGCCAACCGGAACGACCACCTTTCTCTGTTGGGAGATTCAACGTTAATGATCAAAATGTGCCTGACTGCCTAGAATTCTCACCCGATTTCTCAACTGGTTCTGATATTTTTTCCCAGTGA	1920	0.3984	MISKSYHFLLLFCSLSFLLEVALADPPYEICSTSSSYANGGSFENNLNKLLSSLPSNASMSKSYNASSGVDQDIVYGLYMCLDYVSNETCKNCIATAIEDIVKLCPQTEEAIVWEEVCQLRYSNNNFLGKLNVTGNIGKDNVQNTSEPQKFESAVSEILNNLTQRASLNLSANMYATGEVPYEDKTIYALVQCTIDLSASECSRCLESAIRDIPGCCYASIGARVLSRSCYLRYEFYPFYEGASSEPADSLTGNNKGKSKYGTSKIWMITGIIAAAGLAIIVFSCCLYFFMKKRNQRSKLNDKISDIPYIDLGSLCVATKNFSDSNKLGQGGFGPVYKGILSNGQEVAIKRLSNCSEQGTEEFVNEVLLIMKLQHKNLVRLLGFCVDGEEKLLVYEFLPNGSLDVLLFDSKQRAQLDWSKRLDIISGIAKGILYLHEDSRLKIIHRDLKASNVLLDYDMTPKISDFGMARIFAGSEDEASTATIVGTYGYMAPEYAMEGLYSIKSDVYGFGVLLLEIITGSRNAGFYHSKSFPSLLAYAWHLWNEGKGLELNDPFLYDSCPEDQFLRYLNIGLLCVQEDAYERPSMASVVLMMKNESATLGQPERPPFSVGRFNVNDQNVPDCLEFSPDFSTGSDIFSQ	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3628g00010	639	ProSiteProfiles	Gnk2-homologous domain profile.	25	127	IPR002902	-
	Gabi3628g00010	639	FunFam	Cysteine-rich receptor-like protein kinase 10	136	239	-	-
	Gabi3628g00010	639	SUPERFAMILY	Protein kinase-like (PK-like)	305	625	IPR011009	-
	Gabi3628g00010	639	FunFam	Cysteine-rich receptor-like protein kinase 10	290	397	-	-
	Gabi3628g00010	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	443	455	IPR008271	GO:0004672\|GO:0006468
	Gabi3628g00010	639	Gene3D	Phosphorylase Kinase; domain 1	287	397	-	-
	Gabi3628g00010	639	Pfam	Protein tyrosine and serine/threonine kinase	325	532	IPR001245	GO:0004672\|GO:0006468
	Gabi3628g00010	639	Gene3D	-	137	239	IPR038408	-
	Gabi3628g00010	639	Gene3D	-	26	127	IPR038408	-
	Gabi3628g00010	639	Gene3D	Transferase(Phosphotransferase) domain 1	398	603	-	-
	Gabi3628g00010	639	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	398	601	-	-
	Gabi3628g00010	639	ProSiteProfiles	Protein kinase domain profile.	322	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3628g00010	639	Pfam	Salt stress response/antifungal	143	236	IPR002902	-
	Gabi3628g00010	639	Pfam	Salt stress response/antifungal	31	124	IPR002902	-
	Gabi3628g00010	639	SMART	serkin_6	322	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3628g00010	639	FunFam	Cysteine-rich receptor-like protein kinase 28	27	126	-	-
	Gabi3628g00010	639	ProSiteProfiles	Gnk2-homologous domain profile.	133	239	IPR002902	-
	Gabi3628g00010	639	CDD	STKc_IRAK	328	595	-	-
	Gabi3628g00010	639	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	33	611	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3628g00010	Gabi-Chr3628	43827	46403	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3628g00010	15	608	Receptor kinase-like Gene Family	AT4G05200	44.000	9.31e-177	517

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gabi3628g00010		PK_Tyr_Ser-Thr	2.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3628g00010	-		-	gmx:102669364	917.531